Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1940 and GFF1941 are separated by 30 nucleotides GFF1941 and GFF1942 are separated by 53 nucleotides GFF1942 and GFF1943 are separated by 88 nucleotides GFF1943 and GFF1944 are separated by 5 nucleotides
GFF1940 - Pirin-related protein, at 814,683 to 815,552
GFF1940
GFF1941 - transcriptional regulator, AbrB family, at 815,583 to 815,795
GFF1941
GFF1942 - Beta-lactamase (EC 3.5.2.6), at 815,849 to 816,715
GFF1942
GFF1943 - Glycine cleavage system transcriptional activator, at 816,804 to 817,685
GFF1943
GFF1944 - Cyanate hydratase (EC 4.2.1.104), at 817,691 to 818,134
GFF1944
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2 at 814.884 kb on + strand, within GFF1940 at 814.884 kb on + strand, within GFF1940 at 814.884 kb on + strand, within GFF1940 at 814.884 kb on + strand, within GFF1940 at 814.885 kb on - strand, within GFF1940 at 815.169 kb on + strand, within GFF1940 at 815.211 kb on + strand, within GFF1940 at 815.304 kb on + strand, within GFF1940 at 815.304 kb on + strand, within GFF1940 at 815.305 kb on - strand, within GFF1940 at 815.319 kb on + strand, within GFF1940 at 815.319 kb on + strand, within GFF1940 at 815.319 kb on + strand, within GFF1940 at 815.319 kb on + strand, within GFF1940 at 815.320 kb on - strand, within GFF1940 at 815.568 kb on + strand at 815.569 kb on - strand at 815.569 kb on - strand at 815.569 kb on - strand at 815.569 kb on - strand at 815.580 kb on + strand at 815.580 kb on + strand at 815.581 kb on - strand at 815.581 kb on - strand at 815.581 kb on - strand at 815.581 kb on - strand at 815.681 kb on + strand, within GFF1941 at 815.769 kb on + strand, within GFF1941 at 815.805 kb on + strand at 815.806 kb on - strand at 815.806 kb on - strand at 816.262 kb on - strand, within GFF1942 at 816.289 kb on - strand, within GFF1942 at 816.289 kb on - strand, within GFF1942 at 816.649 kb on + strand at 816.649 kb on + strand at 816.649 kb on + strand at 817.704 kb on + strand at 817.705 kb on - strand at 817.705 kb on - strand at 817.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 814,884 + GFF1940 0.23 +0.5 814,884 + GFF1940 0.23 +0.1 814,884 + GFF1940 0.23 -1.1 814,884 + GFF1940 0.23 +0.1 814,885 - GFF1940 0.23 -0.8 815,169 + GFF1940 0.56 +0.5 815,211 + GFF1940 0.61 +0.1 815,304 + GFF1940 0.71 -0.1 815,304 + GFF1940 0.71 +0.4 815,305 - GFF1940 0.71 +1.2 815,319 + GFF1940 0.73 +0.6 815,319 + GFF1940 0.73 +0.6 815,319 + GFF1940 0.73 +1.4 815,319 + GFF1940 0.73 +0.0 815,320 - GFF1940 0.73 -0.3 815,568 + -0.1 815,569 - -0.4 815,569 - +0.1 815,569 - -0.1 815,569 - +0.0 815,580 + +0.7 815,580 + +0.5 815,581 - -0.9 815,581 - +1.8 815,581 - -1.9 815,581 - +1.2 815,681 + GFF1941 0.46 +0.1 815,769 + GFF1941 0.87 +0.3 815,805 + -0.2 815,806 - +0.5 815,806 - -0.1 816,262 - GFF1942 0.48 +1.5 816,289 - GFF1942 0.51 -0.0 816,289 - GFF1942 0.51 +0.0 816,649 + +0.5 816,649 + -0.1 816,649 + -0.6 817,704 + -0.2 817,705 - -0.8 817,705 - -1.0 817,705 - -0.1
Or see this region's nucleotide sequence