Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1879

Experiment: Ying_OrganicAcid7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1877 and GFF1878 are separated by 18 nucleotidesGFF1878 and GFF1879 are separated by 10 nucleotidesGFF1879 and GFF1880 are separated by 18 nucleotidesGFF1880 and GFF1881 are separated by 15 nucleotides GFF1877 - probable MFS transporter, at 740,925 to 742,127 GFF1877 GFF1878 - TRAP-type C4-dicarboxylate transport system, small permease component, at 742,146 to 742,655 GFF1878 GFF1879 - TRAP-type C4-dicarboxylate transport system, large permease component, at 742,666 to 743,967 GFF1879 GFF1880 - Putative threonine efflux protein, at 743,986 to 744,621 GFF1880 GFF1881 - Exodeoxyribonuclease III (EC 3.1.11.2), at 744,637 to 745,428 GFF1881 Position (kb) 742 743 744Strain fitness (log2 ratio) -2 -1 0 1 2at 741.693 kb on + strand, within GFF1877at 741.693 kb on + strand, within GFF1877at 741.693 kb on + strand, within GFF1877at 741.694 kb on - strand, within GFF1877at 741.862 kb on - strand, within GFF1877at 741.862 kb on - strand, within GFF1877at 742.135 kb on + strandat 742.180 kb on + strandat 742.180 kb on + strandat 742.180 kb on + strandat 742.181 kb on - strandat 742.181 kb on - strandat 742.181 kb on - strandat 742.230 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.329 kb on + strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.330 kb on - strand, within GFF1878at 742.419 kb on + strand, within GFF1878at 742.419 kb on + strand, within GFF1878at 742.419 kb on + strand, within GFF1878at 742.420 kb on - strand, within GFF1878at 742.420 kb on - strand, within GFF1878at 742.420 kb on - strand, within GFF1878at 742.768 kb on + strandat 742.769 kb on - strandat 742.841 kb on - strand, within GFF1879at 742.841 kb on - strand, within GFF1879at 742.867 kb on - strand, within GFF1879at 743.048 kb on - strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.254 kb on + strand, within GFF1879at 743.254 kb on + strand, within GFF1879at 743.254 kb on + strand, within GFF1879at 743.255 kb on - strand, within GFF1879at 743.255 kb on - strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.546 kb on - strand, within GFF1879at 743.869 kb on + strandat 743.887 kb on + strandat 743.888 kb on - strandat 743.923 kb on + strandat 743.923 kb on + strandat 743.923 kb on + strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 744.170 kb on + strand, within GFF1880at 744.171 kb on - strand, within GFF1880at 744.171 kb on - strand, within GFF1880at 744.356 kb on + strand, within GFF1880at 744.357 kb on - strand, within GFF1880at 744.357 kb on - strand, within GFF1880at 744.357 kb on - strand, within GFF1880at 744.374 kb on + strand, within GFF1880at 744.374 kb on + strand, within GFF1880at 744.374 kb on + strand, within GFF1880at 744.375 kb on - strand, within GFF1880at 744.375 kb on - strand, within GFF1880at 744.593 kb on + strandat 744.594 kb on - strandat 744.594 kb on - strandat 744.653 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.779 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.845 kb on + strand, within GFF1881at 744.846 kb on - strand, within GFF1881at 744.846 kb on - strand, within GFF1881

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2
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741,693 + GFF1877 0.64 -0.0
741,693 + GFF1877 0.64 -0.1
741,693 + GFF1877 0.64 -0.9
741,694 - GFF1877 0.64 -0.5
741,862 - GFF1877 0.78 +0.6
741,862 - GFF1877 0.78 +0.7
742,135 + +0.2
742,180 + -0.1
742,180 + +1.8
742,180 + +0.2
742,181 - -0.4
742,181 - -0.4
742,181 - +0.0
742,230 + GFF1878 0.16 +0.6
742,329 + GFF1878 0.36 -0.5
742,329 + GFF1878 0.36 -1.4
742,329 + GFF1878 0.36 -0.4
742,329 + GFF1878 0.36 +0.6
742,329 + GFF1878 0.36 -0.2
742,329 + GFF1878 0.36 -0.1
742,329 + GFF1878 0.36 -0.1
742,329 + GFF1878 0.36 +0.0
742,330 - GFF1878 0.36 -0.5
742,330 - GFF1878 0.36 -0.7
742,330 - GFF1878 0.36 +0.2
742,330 - GFF1878 0.36 +0.1
742,330 - GFF1878 0.36 +0.3
742,330 - GFF1878 0.36 -0.0
742,330 - GFF1878 0.36 +1.2
742,330 - GFF1878 0.36 +0.1
742,330 - GFF1878 0.36 +0.0
742,330 - GFF1878 0.36 -2.1
742,330 - GFF1878 0.36 +0.3
742,330 - GFF1878 0.36 +0.1
742,330 - GFF1878 0.36 +0.4
742,419 + GFF1878 0.54 +0.2
742,419 + GFF1878 0.54 +0.4
742,419 + GFF1878 0.54 +0.1
742,420 - GFF1878 0.54 -0.7
742,420 - GFF1878 0.54 -0.3
742,420 - GFF1878 0.54 -0.2
742,768 + +0.9
742,769 - +0.6
742,841 - GFF1879 0.13 -0.7
742,841 - GFF1879 0.13 +0.2
742,867 - GFF1879 0.15 -0.3
743,048 - GFF1879 0.29 -0.5
743,242 + GFF1879 0.44 -0.5
743,242 + GFF1879 0.44 -0.3
743,242 + GFF1879 0.44 +1.8
743,242 + GFF1879 0.44 -0.2
743,242 + GFF1879 0.44 +0.3
743,243 - GFF1879 0.44 +0.2
743,243 - GFF1879 0.44 +0.0
743,243 - GFF1879 0.44 +1.0
743,243 - GFF1879 0.44 -0.9
743,243 - GFF1879 0.44 -0.6
743,243 - GFF1879 0.44 +0.2
743,243 - GFF1879 0.44 +0.7
743,254 + GFF1879 0.45 +0.8
743,254 + GFF1879 0.45 +0.3
743,254 + GFF1879 0.45 -0.1
743,255 - GFF1879 0.45 +0.1
743,255 - GFF1879 0.45 +0.3
743,545 + GFF1879 0.68 -0.1
743,545 + GFF1879 0.68 +0.2
743,545 + GFF1879 0.68 -0.0
743,545 + GFF1879 0.68 -0.4
743,545 + GFF1879 0.68 -0.1
743,545 + GFF1879 0.68 +0.9
743,546 - GFF1879 0.68 -0.2
743,869 + -0.3
743,887 + +0.4
743,888 - +0.2
743,923 + -1.5
743,923 + +0.4
743,923 + -0.7
743,924 - +0.7
743,924 - -0.3
743,924 - +1.5
743,924 - -0.6
743,924 - +0.0
743,924 - +0.1
743,924 - +0.2
743,924 - +0.3
743,924 - +1.5
743,924 - -0.5
743,924 - +0.2
744,170 + GFF1880 0.29 +0.7
744,171 - GFF1880 0.29 -0.2
744,171 - GFF1880 0.29 -0.6
744,356 + GFF1880 0.58 +1.5
744,357 - GFF1880 0.58 -0.1
744,357 - GFF1880 0.58 +0.8
744,357 - GFF1880 0.58 -2.2
744,374 + GFF1880 0.61 -0.4
744,374 + GFF1880 0.61 +0.4
744,374 + GFF1880 0.61 +0.2
744,375 - GFF1880 0.61 -0.1
744,375 - GFF1880 0.61 -0.1
744,593 + -1.3
744,594 - +0.5
744,594 - +0.9
744,653 + +0.1
744,698 + +0.9
744,698 + -0.6
744,698 + -1.0
744,698 + +0.1
744,699 - +1.2
744,699 - +0.2
744,699 - +2.3
744,699 - +0.5
744,699 - +0.2
744,699 - -0.1
744,699 - -0.1
744,749 + GFF1881 0.14 +0.9
744,749 + GFF1881 0.14 +0.5
744,749 + GFF1881 0.14 +1.5
744,749 + GFF1881 0.14 +0.0
744,749 + GFF1881 0.14 +0.6
744,749 + GFF1881 0.14 -0.0
744,750 - GFF1881 0.14 +0.3
744,750 - GFF1881 0.14 +0.6
744,750 - GFF1881 0.14 +0.3
744,750 - GFF1881 0.14 -0.4
744,779 + GFF1881 0.18 +1.1
744,809 + GFF1881 0.22 -0.1
744,809 + GFF1881 0.22 +0.2
744,809 + GFF1881 0.22 +0.3
744,810 - GFF1881 0.22 +0.6
744,810 - GFF1881 0.22 -0.9
744,810 - GFF1881 0.22 -0.0
744,845 + GFF1881 0.26 +0.3
744,846 - GFF1881 0.26 +0.2
744,846 - GFF1881 0.26 -0.9

Or see this region's nucleotide sequence