Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1554

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
409,268	-				+0.2
409,416	+		GFF1554	0.11	-0.5
409,570	-		GFF1554	0.27	+0.1
409,575	-		GFF1554	0.27	+0.1
410,199	+		GFF1554	0.88	-0.6
410,353	+				+0.0
410,425	+				+0.0
410,425	+				-1.1
410,497	+		GFF1555	0.15	-1.1
410,503	+		GFF1555	0.16	+0.3
410,504	-		GFF1555	0.16	+0.2
410,729	-		GFF1555	0.38	-0.1
410,926	+		GFF1555	0.57	-1.8
410,927	-		GFF1555	0.57	+1.1
411,049	+		GFF1555	0.69	-0.3
411,157	+		GFF1555	0.80	+0.1
411,199	+		GFF1555	0.84	+0.5
411,200	-		GFF1555	0.84	+0.0