Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1480 and GFF1481 are separated by 142 nucleotides GFF1481 and GFF1482 are separated by 96 nucleotides GFF1482 and GFF1483 are separated by 56 nucleotides GFF1483 and GFF1484 overlap by 32 nucleotides
GFF1480 - hypothetical protein, at 330,257 to 330,970
GFF1480
GFF1481 - blr2406; hypothetical protein, at 331,113 to 331,610
GFF1481
GFF1482 - FIG00581414: hypothetical protein, at 331,707 to 332,276
GFF1482
GFF1483 - Putative diheme cytochrome c-553, at 332,333 to 333,235
GFF1483
GFF1484 - hypothetical protein, at 333,204 to 333,521
GFF1484
Position (kb) 331
332
333 Strain fitness (log2 ratio) -1
0
1 at 331.276 kb on + strand, within GFF1481 at 331.288 kb on + strand, within GFF1481 at 331.288 kb on + strand, within GFF1481 at 331.289 kb on - strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.677 kb on - strand at 331.762 kb on - strand at 331.762 kb on - strand at 332.223 kb on + strand at 332.223 kb on + strand at 332.223 kb on + strand at 332.420 kb on + strand at 332.420 kb on + strand at 332.420 kb on + strand at 332.513 kb on + strand, within GFF1483 at 332.513 kb on + strand, within GFF1483 at 332.513 kb on + strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.514 kb on - strand, within GFF1483 at 332.519 kb on + strand, within GFF1483 at 332.519 kb on + strand, within GFF1483 at 332.520 kb on - strand, within GFF1483 at 332.648 kb on + strand, within GFF1483 at 332.732 kb on + strand, within GFF1483 at 332.733 kb on - strand, within GFF1483 at 332.774 kb on + strand, within GFF1483 at 332.775 kb on - strand, within GFF1483 at 332.775 kb on - strand, within GFF1483 at 332.946 kb on - strand, within GFF1483 at 332.946 kb on - strand, within GFF1483 at 332.946 kb on - strand, within GFF1483 at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.194 kb on + strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.195 kb on - strand at 333.200 kb on + strand at 333.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 331,276 + GFF1481 0.33 +0.1 331,288 + GFF1481 0.35 +0.2 331,288 + GFF1481 0.35 -0.3 331,289 - GFF1481 0.35 +0.7 331,369 + GFF1481 0.51 +0.7 331,369 + GFF1481 0.51 -0.3 331,369 + GFF1481 0.51 +0.7 331,369 + GFF1481 0.51 -0.2 331,370 - GFF1481 0.52 -1.2 331,370 - GFF1481 0.52 -0.4 331,370 - GFF1481 0.52 -0.0 331,370 - GFF1481 0.52 -0.5 331,370 - GFF1481 0.52 -0.9 331,370 - GFF1481 0.52 -0.5 331,370 - GFF1481 0.52 -0.5 331,370 - GFF1481 0.52 +1.3 331,370 - GFF1481 0.52 +0.3 331,677 - +0.9 331,762 - -0.0 331,762 - -0.3 332,223 + -0.6 332,223 + +0.3 332,223 + +0.8 332,420 + -0.0 332,420 + -0.3 332,420 + -0.1 332,513 + GFF1483 0.20 +0.1 332,513 + GFF1483 0.20 -0.6 332,513 + GFF1483 0.20 +0.7 332,514 - GFF1483 0.20 -0.1 332,514 - GFF1483 0.20 +0.5 332,514 - GFF1483 0.20 +0.7 332,514 - GFF1483 0.20 -0.3 332,514 - GFF1483 0.20 +0.9 332,514 - GFF1483 0.20 +0.2 332,514 - GFF1483 0.20 -0.0 332,519 + GFF1483 0.21 +0.3 332,519 + GFF1483 0.21 -0.0 332,520 - GFF1483 0.21 +0.1 332,648 + GFF1483 0.35 -0.1 332,732 + GFF1483 0.44 +0.1 332,733 - GFF1483 0.44 +0.2 332,774 + GFF1483 0.49 +0.2 332,775 - GFF1483 0.49 -0.1 332,775 - GFF1483 0.49 +0.6 332,946 - GFF1483 0.68 +0.0 332,946 - GFF1483 0.68 -1.3 332,946 - GFF1483 0.68 +0.1 333,194 + +0.9 333,194 + -0.0 333,194 + -0.1 333,194 + -1.3 333,194 + -0.1 333,194 + +0.2 333,194 + -0.0 333,195 - -0.2 333,195 - +1.1 333,195 - +0.9 333,195 - +1.2 333,195 - -0.0 333,200 + -0.1 333,200 + +0.5
Or see this region's nucleotide sequence