Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1402

Experiment: Ying_OrganicAcid7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1401 and GFF1402 overlap by 22 nucleotidesGFF1402 and GFF1403 are separated by 22 nucleotides GFF1401 - Probable glycosyltransferase, at 262,935 to 264,182 GFF1401 GFF1402 - Queuosine Biosynthesis QueC ATPase, at 264,161 to 264,928 GFF1402 GFF1403 - EAL domain protein, at 264,951 to 266,150 GFF1403 Position (kb) 264 265Strain fitness (log2 ratio) -1 0 1 2at 263.260 kb on + strand, within GFF1401at 263.261 kb on - strand, within GFF1401at 263.261 kb on - strand, within GFF1401at 263.286 kb on + strand, within GFF1401at 263.287 kb on - strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.456 kb on + strand, within GFF1401at 263.457 kb on - strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.715 kb on + strand, within GFF1401at 263.715 kb on + strand, within GFF1401at 263.716 kb on - strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.875 kb on - strand, within GFF1401at 263.875 kb on - strand, within GFF1401at 263.875 kb on - strand, within GFF1401at 263.883 kb on + strand, within GFF1401at 263.884 kb on - strand, within GFF1401at 263.884 kb on - strand, within GFF1401at 263.884 kb on - strand, within GFF1401at 264.112 kb on - strandat 264.180 kb on + strandat 264.180 kb on + strandat 264.180 kb on + strandat 264.181 kb on - strandat 264.181 kb on - strandat 264.235 kb on - strandat 264.270 kb on + strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.478 kb on - strand, within GFF1402at 264.932 kb on - strandat 265.124 kb on - strand, within GFF1403at 265.243 kb on + strand, within GFF1403at 265.243 kb on + strand, within GFF1403at 265.243 kb on + strand, within GFF1403at 265.243 kb on + strand, within GFF1403at 265.244 kb on - strand, within GFF1403at 265.244 kb on - strand, within GFF1403at 265.244 kb on - strand, within GFF1403at 265.244 kb on - strand, within GFF1403at 265.484 kb on - strand, within GFF1403at 265.585 kb on + strand, within GFF1403at 265.586 kb on - strand, within GFF1403

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2
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263,260 + GFF1401 0.26 -0.3
263,261 - GFF1401 0.26 +0.3
263,261 - GFF1401 0.26 -0.6
263,286 + GFF1401 0.28 -0.5
263,287 - GFF1401 0.28 -0.1
263,301 + GFF1401 0.29 +0.7
263,301 + GFF1401 0.29 -0.4
263,301 + GFF1401 0.29 +0.8
263,301 + GFF1401 0.29 -0.6
263,301 + GFF1401 0.29 -0.3
263,301 + GFF1401 0.29 +0.2
263,301 + GFF1401 0.29 +0.9
263,301 + GFF1401 0.29 +0.1
263,301 + GFF1401 0.29 -0.3
263,302 - GFF1401 0.29 +1.2
263,302 - GFF1401 0.29 +0.7
263,302 - GFF1401 0.29 -0.1
263,302 - GFF1401 0.29 -1.3
263,302 - GFF1401 0.29 -0.2
263,302 - GFF1401 0.29 -1.0
263,302 - GFF1401 0.29 +0.1
263,302 - GFF1401 0.29 +0.1
263,302 - GFF1401 0.29 -0.2
263,302 - GFF1401 0.29 -0.9
263,456 + GFF1401 0.42 -0.2
263,457 - GFF1401 0.42 +1.0
263,595 + GFF1401 0.53 +1.0
263,595 + GFF1401 0.53 -0.5
263,595 + GFF1401 0.53 +0.1
263,595 + GFF1401 0.53 -0.6
263,595 + GFF1401 0.53 -0.1
263,595 + GFF1401 0.53 +0.6
263,595 + GFF1401 0.53 +0.0
263,595 + GFF1401 0.53 -1.1
263,595 + GFF1401 0.53 +0.5
263,595 + GFF1401 0.53 +0.1
263,596 - GFF1401 0.53 -0.1
263,596 - GFF1401 0.53 -0.0
263,596 - GFF1401 0.53 +0.5
263,596 - GFF1401 0.53 -0.4
263,596 - GFF1401 0.53 +0.1
263,596 - GFF1401 0.53 +1.0
263,596 - GFF1401 0.53 -0.5
263,596 - GFF1401 0.53 +0.2
263,715 + GFF1401 0.62 -0.4
263,715 + GFF1401 0.62 -0.6
263,716 - GFF1401 0.63 +0.1
263,874 + GFF1401 0.75 +1.0
263,874 + GFF1401 0.75 +0.2
263,874 + GFF1401 0.75 -1.0
263,874 + GFF1401 0.75 +0.2
263,874 + GFF1401 0.75 +0.2
263,874 + GFF1401 0.75 +1.3
263,875 - GFF1401 0.75 -0.2
263,875 - GFF1401 0.75 -0.0
263,875 - GFF1401 0.75 -0.9
263,883 + GFF1401 0.76 +0.5
263,884 - GFF1401 0.76 +0.0
263,884 - GFF1401 0.76 +0.1
263,884 - GFF1401 0.76 -0.3
264,112 - +0.6
264,180 + -0.1
264,180 + +0.1
264,180 + -0.5
264,181 - -0.5
264,181 - -0.4
264,235 - -0.1
264,270 + GFF1402 0.14 -0.6
264,271 - GFF1402 0.14 -0.8
264,271 - GFF1402 0.14 -0.5
264,271 - GFF1402 0.14 +0.8
264,271 - GFF1402 0.14 -1.4
264,478 - GFF1402 0.41 +0.2
264,932 - -1.5
265,124 - GFF1403 0.14 +1.8
265,243 + GFF1403 0.24 +0.9
265,243 + GFF1403 0.24 -0.9
265,243 + GFF1403 0.24 -0.8
265,243 + GFF1403 0.24 +0.4
265,244 - GFF1403 0.24 -0.6
265,244 - GFF1403 0.24 -0.4
265,244 - GFF1403 0.24 -0.3
265,244 - GFF1403 0.24 -0.3
265,484 - GFF1403 0.44 -0.3
265,585 + GFF1403 0.53 -0.3
265,586 - GFF1403 0.53 +0.2

Or see this region's nucleotide sequence