Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1330 and GFF1331 are separated by 20 nucleotides GFF1331 and GFF1332 are separated by 41 nucleotides GFF1332 and GFF1333 overlap by 4 nucleotides
GFF1330 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 182,593 to 183,762
GFF1330
GFF1331 - 3-dehydroquinate synthase (EC 4.2.3.4), at 183,783 to 184,904
GFF1331
GFF1332 - Shikimate kinase I (EC 2.7.1.71), at 184,946 to 185,509
GFF1332
GFF1333 - Type IV pilus biogenesis protein PilQ, at 185,506 to 187,590
GFF1333
Position (kb) 183
184
185 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 182.957 kb on + strand, within GFF1330 at 182.957 kb on + strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 182.958 kb on - strand, within GFF1330 at 183.047 kb on + strand, within GFF1330 at 183.131 kb on + strand, within GFF1330 at 183.132 kb on - strand, within GFF1330 at 183.132 kb on - strand, within GFF1330 at 183.617 kb on + strand, within GFF1330 at 183.617 kb on + strand, within GFF1330 at 183.618 kb on - strand, within GFF1330 at 183.618 kb on - strand, within GFF1330 at 183.926 kb on - strand, within GFF1331 at 184.102 kb on + strand, within GFF1331 at 184.315 kb on + strand, within GFF1331 at 184.316 kb on - strand, within GFF1331 at 184.405 kb on + strand, within GFF1331 at 184.405 kb on + strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.526 kb on - strand, within GFF1331 at 184.526 kb on - strand, within GFF1331 at 184.526 kb on - strand, within GFF1331 at 184.654 kb on + strand, within GFF1331 at 184.654 kb on + strand, within GFF1331 at 184.655 kb on - strand, within GFF1331 at 184.655 kb on - strand, within GFF1331 at 184.655 kb on - strand, within GFF1331 at 184.696 kb on + strand, within GFF1331 at 184.697 kb on - strand, within GFF1331 at 184.697 kb on - strand, within GFF1331 at 184.697 kb on - strand, within GFF1331 at 184.732 kb on + strand, within GFF1331 at 184.795 kb on + strand at 184.795 kb on + strand at 184.795 kb on + strand at 184.796 kb on - strand at 184.796 kb on - strand at 184.840 kb on + strand at 184.840 kb on + strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.918 kb on - strand at 184.947 kb on + strand at 184.948 kb on - strand at 185.086 kb on - strand, within GFF1332 at 185.181 kb on + strand, within GFF1332 at 185.182 kb on - strand, within GFF1332 at 185.182 kb on - strand, within GFF1332 at 185.208 kb on + strand, within GFF1332 at 185.209 kb on - strand, within GFF1332 at 185.209 kb on - strand, within GFF1332 at 185.209 kb on - strand, within GFF1332 at 185.668 kb on - strand at 185.668 kb on - strand at 185.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 182,957 + GFF1330 0.31 -0.0 182,957 + GFF1330 0.31 +0.3 182,958 - GFF1330 0.31 -0.5 182,958 - GFF1330 0.31 +0.1 182,958 - GFF1330 0.31 -0.3 182,958 - GFF1330 0.31 -0.3 182,958 - GFF1330 0.31 -0.4 182,958 - GFF1330 0.31 -0.6 182,958 - GFF1330 0.31 +0.0 182,958 - GFF1330 0.31 +0.2 183,047 + GFF1330 0.39 +1.2 183,131 + GFF1330 0.46 +0.3 183,132 - GFF1330 0.46 -0.1 183,132 - GFF1330 0.46 +0.2 183,617 + GFF1330 0.88 +0.7 183,617 + GFF1330 0.88 -0.5 183,618 - GFF1330 0.88 -0.1 183,618 - GFF1330 0.88 +0.1 183,926 - GFF1331 0.13 -0.9 184,102 + GFF1331 0.28 -2.2 184,315 + GFF1331 0.47 -3.4 184,316 - GFF1331 0.48 -2.0 184,405 + GFF1331 0.55 -5.3 184,405 + GFF1331 0.55 -3.0 184,406 - GFF1331 0.56 -0.9 184,406 - GFF1331 0.56 -1.4 184,406 - GFF1331 0.56 -2.8 184,406 - GFF1331 0.56 -2.1 184,525 + GFF1331 0.66 -2.9 184,525 + GFF1331 0.66 -3.0 184,525 + GFF1331 0.66 -2.1 184,525 + GFF1331 0.66 -2.6 184,525 + GFF1331 0.66 -3.7 184,525 + GFF1331 0.66 -4.5 184,526 - GFF1331 0.66 -2.2 184,526 - GFF1331 0.66 -5.0 184,526 - GFF1331 0.66 -3.8 184,654 + GFF1331 0.78 -4.9 184,654 + GFF1331 0.78 -5.0 184,655 - GFF1331 0.78 -5.1 184,655 - GFF1331 0.78 -6.9 184,655 - GFF1331 0.78 -2.7 184,696 + GFF1331 0.81 -1.7 184,697 - GFF1331 0.81 -1.9 184,697 - GFF1331 0.81 -2.9 184,697 - GFF1331 0.81 -3.3 184,732 + GFF1331 0.85 -0.5 184,795 + -2.5 184,795 + -4.2 184,795 + -3.8 184,796 - -3.1 184,796 - -1.1 184,840 + -1.7 184,840 + -2.6 184,841 - -1.7 184,841 - -3.5 184,841 - -3.1 184,841 - -1.7 184,841 - -2.2 184,841 - -4.1 184,841 - -5.6 184,841 - -5.2 184,918 - -4.0 184,947 + -0.1 184,948 - +0.3 185,086 - GFF1332 0.25 -2.9 185,181 + GFF1332 0.42 -3.8 185,182 - GFF1332 0.42 -4.3 185,182 - GFF1332 0.42 -1.1 185,208 + GFF1332 0.46 -4.4 185,209 - GFF1332 0.47 -3.7 185,209 - GFF1332 0.47 -2.7 185,209 - GFF1332 0.47 -1.5 185,668 - -0.4 185,668 - -0.5 185,668 - +0.1
Or see this region's nucleotide sequence