Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1322 and GFF1323 are separated by 113 nucleotides GFF1323 and GFF1324 are separated by 15 nucleotides GFF1324 and GFF1325 overlap by 4 nucleotides GFF1325 and GFF1326 are separated by 81 nucleotides
GFF1322 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 171,120 to 171,860
GFF1322
GFF1323 - Uncharacterized ABC transporter, periplasmic component YrbD, at 171,974 to 172,462
GFF1323
GFF1324 - Uncharacterized ABC transporter, permease component YrbE, at 172,478 to 173,260
GFF1324
GFF1325 - Methionine ABC transporter ATP-binding protein, at 173,257 to 174,084
GFF1325
GFF1326 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 174,166 to 175,632
GFF1326
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1 at 171.664 kb on + strand, within GFF1322 at 171.664 kb on + strand, within GFF1322 at 171.718 kb on + strand, within GFF1322 at 171.718 kb on + strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.902 kb on + strand at 171.902 kb on + strand at 171.902 kb on + strand at 171.915 kb on + strand at 171.915 kb on + strand at 171.915 kb on + strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.937 kb on + strand at 171.937 kb on + strand at 171.937 kb on + strand at 171.938 kb on - strand at 171.938 kb on - strand at 171.975 kb on + strand at 171.975 kb on + strand at 171.975 kb on + strand at 171.976 kb on - strand at 171.976 kb on - strand at 171.976 kb on - strand at 171.976 kb on - strand at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.134 kb on + strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.135 kb on - strand, within GFF1323 at 172.194 kb on + strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.195 kb on - strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.344 kb on + strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.345 kb on - strand, within GFF1323 at 172.604 kb on + strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 172.605 kb on - strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.034 kb on + strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.035 kb on - strand, within GFF1324 at 173.038 kb on - strand, within GFF1324 at 173.038 kb on - strand, within GFF1324 at 173.579 kb on + strand, within GFF1325 at 173.579 kb on + strand, within GFF1325 at 173.580 kb on - strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.840 kb on + strand, within GFF1325 at 173.841 kb on - strand, within GFF1325 at 174.126 kb on + strand at 174.126 kb on + strand at 174.126 kb on + strand at 174.164 kb on + strand at 174.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 171,664 + GFF1322 0.73 -0.7 171,664 + GFF1322 0.73 -0.9 171,718 + GFF1322 0.81 -1.4 171,718 + GFF1322 0.81 -1.6 171,719 - GFF1322 0.81 -0.9 171,719 - GFF1322 0.81 -0.7 171,719 - GFF1322 0.81 -1.0 171,902 + +0.2 171,902 + +0.7 171,902 + +0.3 171,915 + +0.3 171,915 + +0.0 171,915 + +0.2 171,916 - -0.3 171,916 - -0.0 171,916 - -0.2 171,916 - +0.6 171,916 - -0.2 171,916 - +0.1 171,916 - -0.2 171,916 - +0.8 171,916 - +0.9 171,916 - +0.2 171,937 + -0.0 171,937 + +0.2 171,937 + +0.1 171,938 - +0.1 171,938 - -0.3 171,975 + -0.1 171,975 + -1.0 171,975 + +0.1 171,976 - +0.2 171,976 - +1.1 171,976 - -0.2 171,976 - -0.3 172,134 + GFF1323 0.33 -1.1 172,134 + GFF1323 0.33 -0.2 172,134 + GFF1323 0.33 -0.6 172,134 + GFF1323 0.33 +1.2 172,134 + GFF1323 0.33 -1.2 172,135 - GFF1323 0.33 -0.6 172,135 - GFF1323 0.33 -0.7 172,135 - GFF1323 0.33 -0.9 172,135 - GFF1323 0.33 -0.8 172,135 - GFF1323 0.33 -0.1 172,135 - GFF1323 0.33 -1.2 172,135 - GFF1323 0.33 -1.0 172,194 + GFF1323 0.45 -0.6 172,195 - GFF1323 0.45 -0.7 172,195 - GFF1323 0.45 -0.3 172,195 - GFF1323 0.45 -0.8 172,195 - GFF1323 0.45 -1.0 172,195 - GFF1323 0.45 -1.1 172,344 + GFF1323 0.76 -0.9 172,344 + GFF1323 0.76 -1.0 172,344 + GFF1323 0.76 -2.1 172,345 - GFF1323 0.76 -1.0 172,345 - GFF1323 0.76 -0.5 172,345 - GFF1323 0.76 -1.0 172,345 - GFF1323 0.76 -0.9 172,345 - GFF1323 0.76 -2.1 172,345 - GFF1323 0.76 -1.0 172,345 - GFF1323 0.76 -1.6 172,604 + GFF1324 0.16 -0.8 172,605 - GFF1324 0.16 -1.1 172,605 - GFF1324 0.16 -1.1 172,605 - GFF1324 0.16 -1.7 173,034 + GFF1324 0.71 -1.2 173,034 + GFF1324 0.71 -0.9 173,034 + GFF1324 0.71 -1.1 173,034 + GFF1324 0.71 -1.7 173,034 + GFF1324 0.71 -0.2 173,034 + GFF1324 0.71 -2.1 173,034 + GFF1324 0.71 -0.7 173,034 + GFF1324 0.71 -1.5 173,034 + GFF1324 0.71 -2.1 173,035 - GFF1324 0.71 -0.0 173,035 - GFF1324 0.71 -1.8 173,035 - GFF1324 0.71 +0.3 173,035 - GFF1324 0.71 -0.1 173,035 - GFF1324 0.71 -0.3 173,035 - GFF1324 0.71 -1.1 173,035 - GFF1324 0.71 -0.7 173,035 - GFF1324 0.71 -1.2 173,038 - GFF1324 0.72 -0.4 173,038 - GFF1324 0.72 -1.5 173,579 + GFF1325 0.39 -0.9 173,579 + GFF1325 0.39 -0.3 173,580 - GFF1325 0.39 -1.7 173,840 + GFF1325 0.70 -1.0 173,840 + GFF1325 0.70 -1.4 173,840 + GFF1325 0.70 -0.6 173,841 - GFF1325 0.71 -0.8 174,126 + -1.0 174,126 + -0.0 174,126 + +0.3 174,164 + -0.1 174,165 - -0.9
Or see this region's nucleotide sequence