Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF920 and GFF921 overlap by 40 nucleotides GFF921 and GFF922 are separated by 23 nucleotides GFF922 and GFF923 are separated by 46 nucleotides
GFF920 - L-carnitine dehydratase/bile acid-inducible protein F, at 652,605 to 653,210
GFF920
GFF921 - CAIB/BAIF family protein, at 653,171 to 653,797
GFF921
GFF922 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 653,821 to 655,428
GFF922
GFF923 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 655,475 to 656,617
GFF923
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -1
0
1 at 653.093 kb on - strand, within GFF920 at 653.433 kb on + strand, within GFF921 at 653.433 kb on + strand, within GFF921 at 653.804 kb on + strand at 653.804 kb on + strand at 653.805 kb on - strand at 653.805 kb on - strand at 654.180 kb on - strand, within GFF922 at 654.481 kb on + strand, within GFF922 at 654.631 kb on + strand, within GFF922 at 654.632 kb on - strand, within GFF922 at 654.632 kb on - strand, within GFF922 at 654.632 kb on - strand, within GFF922 at 654.771 kb on - strand, within GFF922 at 654.771 kb on - strand, within GFF922 at 654.771 kb on - strand, within GFF922 at 654.963 kb on + strand, within GFF922 at 654.964 kb on - strand, within GFF922 at 655.076 kb on + strand, within GFF922 at 655.076 kb on + strand, within GFF922 at 655.077 kb on - strand, within GFF922 at 655.079 kb on + strand, within GFF922 at 655.080 kb on - strand, within GFF922 at 655.080 kb on - strand, within GFF922 at 655.364 kb on + strand at 655.365 kb on - strand at 655.430 kb on + strand at 655.455 kb on - strand at 655.564 kb on - strand at 655.833 kb on + strand, within GFF923 at 655.833 kb on + strand, within GFF923 at 655.833 kb on + strand, within GFF923 at 655.834 kb on - strand, within GFF923 at 655.935 kb on + strand, within GFF923 at 656.014 kb on - strand, within GFF923 at 656.358 kb on + strand, within GFF923 at 656.358 kb on + strand, within GFF923 at 656.359 kb on - strand, within GFF923
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 653,093 - GFF920 0.81 +1.1 653,433 + GFF921 0.42 +0.5 653,433 + GFF921 0.42 +0.2 653,804 + -0.1 653,804 + +0.1 653,805 - -0.7 653,805 - -0.1 654,180 - GFF922 0.22 +0.6 654,481 + GFF922 0.41 -0.4 654,631 + GFF922 0.50 -0.4 654,632 - GFF922 0.50 -1.0 654,632 - GFF922 0.50 -0.1 654,632 - GFF922 0.50 -0.0 654,771 - GFF922 0.59 -0.5 654,771 - GFF922 0.59 -0.1 654,771 - GFF922 0.59 -0.3 654,963 + GFF922 0.71 -0.0 654,964 - GFF922 0.71 -0.3 655,076 + GFF922 0.78 -0.6 655,076 + GFF922 0.78 -0.1 655,077 - GFF922 0.78 -1.5 655,079 + GFF922 0.78 -0.4 655,080 - GFF922 0.78 -0.5 655,080 - GFF922 0.78 -0.1 655,364 + +1.2 655,365 - +0.6 655,430 + +0.5 655,455 - +0.1 655,564 - +1.3 655,833 + GFF923 0.31 -0.1 655,833 + GFF923 0.31 +0.1 655,833 + GFF923 0.31 -0.1 655,834 - GFF923 0.31 -0.2 655,935 + GFF923 0.40 -0.1 656,014 - GFF923 0.47 +1.5 656,358 + GFF923 0.77 +0.7 656,358 + GFF923 0.77 -0.1 656,359 - GFF923 0.77 +0.8
Or see this region's nucleotide sequence