Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF872 and GFF873 are separated by 55 nucleotides GFF873 and GFF874 are separated by 8 nucleotides
GFF872 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 594,418 to 595,593
GFF872
GFF873 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 595,649 to 597,610
GFF873
GFF874 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 597,619 to 599,238
GFF874
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -1
0
1
2 at 594.938 kb on + strand, within GFF872 at 595.074 kb on - strand, within GFF872 at 595.074 kb on - strand, within GFF872 at 595.128 kb on - strand, within GFF872 at 595.128 kb on - strand, within GFF872 at 595.128 kb on - strand, within GFF872 at 595.555 kb on - strand at 595.556 kb on + strand at 595.556 kb on + strand at 595.557 kb on - strand at 595.557 kb on - strand at 595.557 kb on - strand at 595.718 kb on + strand at 595.719 kb on - strand at 595.905 kb on + strand, within GFF873 at 595.906 kb on - strand, within GFF873 at 596.076 kb on + strand, within GFF873 at 596.076 kb on + strand, within GFF873 at 596.288 kb on - strand, within GFF873 at 596.575 kb on - strand, within GFF873 at 596.575 kb on - strand, within GFF873 at 596.575 kb on - strand, within GFF873 at 596.755 kb on - strand, within GFF873 at 596.805 kb on + strand, within GFF873 at 596.806 kb on - strand, within GFF873 at 596.806 kb on - strand, within GFF873 at 596.806 kb on - strand, within GFF873 at 597.429 kb on + strand at 597.430 kb on - strand at 597.430 kb on - strand at 597.513 kb on + strand at 597.514 kb on - strand at 597.514 kb on - strand at 597.971 kb on + strand, within GFF874 at 597.971 kb on + strand, within GFF874 at 598.122 kb on - strand, within GFF874 at 598.227 kb on - strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 594,938 + GFF872 0.44 -0.1 595,074 - GFF872 0.56 -0.5 595,074 - GFF872 0.56 -0.8 595,128 - GFF872 0.60 +0.3 595,128 - GFF872 0.60 -0.3 595,128 - GFF872 0.60 +0.6 595,555 - -0.0 595,556 + -1.1 595,556 + +0.0 595,557 - -0.5 595,557 - -1.3 595,557 - +0.3 595,718 + +0.3 595,719 - +0.5 595,905 + GFF873 0.13 -1.3 595,906 - GFF873 0.13 -0.6 596,076 + GFF873 0.22 -0.7 596,076 + GFF873 0.22 +1.1 596,288 - GFF873 0.33 -1.2 596,575 - GFF873 0.47 +0.1 596,575 - GFF873 0.47 +0.5 596,575 - GFF873 0.47 -0.0 596,755 - GFF873 0.56 +0.3 596,805 + GFF873 0.59 +0.4 596,806 - GFF873 0.59 -0.7 596,806 - GFF873 0.59 -1.2 596,806 - GFF873 0.59 -0.0 597,429 + -1.7 597,430 - +1.0 597,430 - -0.0 597,513 + -0.4 597,514 - -0.4 597,514 - -0.2 597,971 + GFF874 0.22 +2.1 597,971 + GFF874 0.22 +1.2 598,122 - GFF874 0.31 +0.4 598,227 - GFF874 0.38 +0.0 598,499 + GFF874 0.54 -0.0 598,499 + GFF874 0.54 +0.2 598,499 + GFF874 0.54 -0.4 598,499 + GFF874 0.54 +0.3
Or see this region's nucleotide sequence