Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF769

Experiment: Ying_AminoAcid20 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF768 and GFF769 are separated by 143 nucleotidesGFF769 and GFF770 are separated by 167 nucleotides GFF768 - Peptide chain release factor 3, at 461,016 to 462,635 GFF768 GFF769 - Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases, at 462,779 to 464,047 GFF769 GFF770 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 464,215 to 465,441 GFF770 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 462.343 kb on + strand, within GFF768at 462.344 kb on - strand, within GFF768at 462.344 kb on - strand, within GFF768at 462.635 kb on + strandat 462.635 kb on + strandat 462.635 kb on + strandat 462.635 kb on + strandat 462.636 kb on - strandat 462.636 kb on - strandat 462.636 kb on - strandat 462.771 kb on + strandat 462.772 kb on - strandat 462.778 kb on + strandat 462.779 kb on - strandat 462.779 kb on - strandat 462.779 kb on - strandat 462.929 kb on + strand, within GFF769at 462.929 kb on + strand, within GFF769at 462.929 kb on + strand, within GFF769at 462.930 kb on - strand, within GFF769at 462.930 kb on - strand, within GFF769at 462.930 kb on - strand, within GFF769at 462.930 kb on - strand, within GFF769at 462.930 kb on - strand, within GFF769at 463.520 kb on + strand, within GFF769at 463.520 kb on + strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.521 kb on - strand, within GFF769at 463.820 kb on + strand, within GFF769at 463.820 kb on + strand, within GFF769at 463.821 kb on - strand, within GFF769at 464.070 kb on + strandat 464.070 kb on + strandat 464.070 kb on + strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.071 kb on - strandat 464.078 kb on + strandat 464.078 kb on + strandat 464.079 kb on - strandat 464.079 kb on - strandat 464.079 kb on - strandat 464.129 kb on + strandat 464.130 kb on - strandat 464.130 kb on - strandat 464.205 kb on + strandat 464.205 kb on + strandat 464.206 kb on - strandat 464.206 kb on - strandat 464.206 kb on - strandat 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.362 kb on + strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.363 kb on - strand, within GFF770at 464.557 kb on + strand, within GFF770at 464.557 kb on + strand, within GFF770at 464.557 kb on + strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.558 kb on - strand, within GFF770at 464.575 kb on + strand, within GFF770at 464.656 kb on + strand, within GFF770at 464.656 kb on + strand, within GFF770at 464.657 kb on - strand, within GFF770at 464.902 kb on + strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.903 kb on - strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.959 kb on + strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 464.960 kb on - strand, within GFF770at 465.022 kb on + strand, within GFF770at 465.022 kb on + strand, within GFF770at 465.023 kb on - strand, within GFF770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
remove
462,343 + GFF768 0.82 -0.3
462,344 - GFF768 0.82 -0.7
462,344 - GFF768 0.82 +0.1
462,635 + -0.5
462,635 + +0.7
462,635 + -1.7
462,635 + -0.7
462,636 - +0.4
462,636 - -0.6
462,636 - -1.0
462,771 + +0.3
462,772 - -0.4
462,778 + -1.3
462,779 - -0.2
462,779 - -0.4
462,779 - -0.7
462,929 + GFF769 0.12 -0.6
462,929 + GFF769 0.12 -0.5
462,929 + GFF769 0.12 -0.1
462,930 - GFF769 0.12 -0.5
462,930 - GFF769 0.12 +0.4
462,930 - GFF769 0.12 +1.9
462,930 - GFF769 0.12 -0.2
462,930 - GFF769 0.12 +0.5
463,520 + GFF769 0.58 +0.1
463,520 + GFF769 0.58 -0.6
463,521 - GFF769 0.58 +0.8
463,521 - GFF769 0.58 -0.3
463,521 - GFF769 0.58 -0.2
463,521 - GFF769 0.58 -0.5
463,521 - GFF769 0.58 -0.3
463,820 + GFF769 0.82 -1.1
463,820 + GFF769 0.82 +1.7
463,821 - GFF769 0.82 -2.0
464,070 + +0.0
464,070 + -0.2
464,070 + -0.2
464,071 - -0.9
464,071 - +0.5
464,071 - -0.1
464,071 - -0.2
464,071 - +0.6
464,078 + +0.4
464,078 + -1.3
464,079 - -0.0
464,079 - -0.3
464,079 - -0.2
464,129 + +0.3
464,130 - -0.2
464,130 - +1.3
464,205 + -1.4
464,205 + -0.5
464,206 - -2.6
464,206 - -0.9
464,206 - -2.8
464,362 + GFF770 0.12 -2.9
464,362 + GFF770 0.12 -2.1
464,362 + GFF770 0.12 -2.3
464,362 + GFF770 0.12 -1.4
464,362 + GFF770 0.12 -1.6
464,362 + GFF770 0.12 -2.0
464,363 - GFF770 0.12 -3.7
464,363 - GFF770 0.12 -1.1
464,363 - GFF770 0.12 -3.0
464,363 - GFF770 0.12 -2.7
464,557 + GFF770 0.28 -1.4
464,557 + GFF770 0.28 -2.3
464,557 + GFF770 0.28 -2.7
464,558 - GFF770 0.28 -2.2
464,558 - GFF770 0.28 -1.2
464,558 - GFF770 0.28 -0.9
464,558 - GFF770 0.28 -2.7
464,558 - GFF770 0.28 -3.6
464,558 - GFF770 0.28 -3.5
464,558 - GFF770 0.28 -0.8
464,558 - GFF770 0.28 -1.8
464,558 - GFF770 0.28 -1.0
464,575 + GFF770 0.29 -2.4
464,656 + GFF770 0.36 -3.0
464,656 + GFF770 0.36 -2.8
464,657 - GFF770 0.36 -3.3
464,902 + GFF770 0.56 -1.1
464,903 - GFF770 0.56 -2.1
464,903 - GFF770 0.56 -0.1
464,903 - GFF770 0.56 -2.1
464,903 - GFF770 0.56 -2.3
464,959 + GFF770 0.61 -2.9
464,959 + GFF770 0.61 -2.8
464,959 + GFF770 0.61 -1.5
464,959 + GFF770 0.61 -1.3
464,959 + GFF770 0.61 -1.8
464,959 + GFF770 0.61 -2.5
464,959 + GFF770 0.61 -1.1
464,959 + GFF770 0.61 -2.5
464,959 + GFF770 0.61 -1.3
464,959 + GFF770 0.61 -1.7
464,959 + GFF770 0.61 -0.8
464,960 - GFF770 0.61 -1.7
464,960 - GFF770 0.61 -2.6
464,960 - GFF770 0.61 -1.2
464,960 - GFF770 0.61 -2.8
464,960 - GFF770 0.61 -2.1
464,960 - GFF770 0.61 -3.6
464,960 - GFF770 0.61 -2.1
464,960 - GFF770 0.61 -2.0
464,960 - GFF770 0.61 -2.0
464,960 - GFF770 0.61 -2.5
464,960 - GFF770 0.61 -1.3
465,022 + GFF770 0.66 -1.8
465,022 + GFF770 0.66 -0.8
465,023 - GFF770 0.66 -2.5

Or see this region's nucleotide sequence