Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5825

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
19,077	+		GFF5824	0.30	-0.2
19,266	+		GFF5824	0.45	-0.4
19,342	+		GFF5824	0.51	+0.5
19,362	+		GFF5824	0.52	+0.3
19,363	-		GFF5824	0.53	-0.3
19,363	-		GFF5824	0.53	-0.4
19,413	+		GFF5824	0.56	-0.0
19,414	-		GFF5824	0.56	+0.4
19,659	+		GFF5824	0.75	+0.4
19,728	+		GFF5824	0.81	-0.0
19,909	-				+0.5
19,910	-				-1.3
20,162	+		GFF5825	0.10	+0.1
20,825	-		GFF5825	0.51	-2.6
20,825	-		GFF5825	0.51	+0.3
20,825	-		GFF5825	0.51	+0.2
20,831	-		GFF5825	0.51	-0.8
21,004	+		GFF5825	0.62	-0.6
21,283	+		GFF5825	0.79	-1.3
21,284	-		GFF5825	0.79	+0.2
21,326	-		GFF5825	0.82	-0.3
21,469	+				+0.7
21,590	-				-1.7
21,766	-				+1.1
21,955	-				-0.9
21,990	+				+0.2
22,185	+		GFF5826	0.14	+0.1
22,312	-		GFF5826	0.17	+0.1
22,320	+		GFF5826	0.17	+0.2
22,320	+		GFF5826	0.17	-0.2
22,321	-		GFF5826	0.17	-0.9
22,392	+		GFF5826	0.19	+1.2
22,615	-		GFF5826	0.25	+0.8