Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5760

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,784,649	+		GFF5759	0.31	-1.5
2,784,764	-		GFF5759	0.41	-1.8
2,785,078	+		GFF5759	0.68	-2.3
2,785,079	-		GFF5759	0.68	-2.8
2,785,390	+				-1.6
2,785,390	+				-0.4
2,785,391	-				+0.1
2,785,510	-				+0.4
2,785,514	+				+0.4
2,785,514	+				-0.2
2,785,514	+				-0.9
2,785,514	+				+0.3
2,785,532	+				-0.7
2,785,737	+		GFF5760	0.28	+1.3
2,785,962	+		GFF5760	0.61	+0.5
2,785,963	-		GFF5760	0.61	-0.0
2,786,067	+		GFF5760	0.77	-0.4
2,786,067	+		GFF5760	0.77	+0.4
2,786,067	+		GFF5760	0.77	-0.3
2,786,067	+		GFF5760	0.77	+0.3
2,786,067	+		GFF5760	0.77	-0.5
2,786,067	+		GFF5760	0.77	+0.0
2,786,067	+		GFF5760	0.77	-0.0
2,786,067	+		GFF5760	0.77	-0.3
2,786,067	+		GFF5760	0.77	+0.9
2,786,067	+		GFF5760	0.77	+0.1
2,786,067	+		GFF5760	0.77	-0.3
2,786,068	-		GFF5760	0.77	-0.2
2,786,068	-		GFF5760	0.77	-0.6
2,786,068	-		GFF5760	0.77	+0.9
2,786,068	-		GFF5760	0.77	-1.0
2,786,068	-		GFF5760	0.77	-0.4
2,786,068	-		GFF5760	0.77	-0.7
2,786,068	-		GFF5760	0.77	-0.3
2,786,381	+		GFF5761	0.14	+0.1
2,786,382	-		GFF5761	0.14	-0.8
2,786,382	-		GFF5761	0.14	-0.3
2,786,382	-		GFF5761	0.14	-0.5
2,787,062	+		GFF5761	0.73	-0.0
2,787,188	+		GFF5761	0.84	+0.1
2,787,188	+		GFF5761	0.84	-1.1
2,787,189	-		GFF5761	0.84	+0.7
2,787,189	-		GFF5761	0.84	+0.2