Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5719

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,745,846	+		GFF5718	0.74	+0.4
2,745,846	+		GFF5718	0.74	-0.9
2,745,847	-		GFF5718	0.74	+0.7
2,745,847	-		GFF5718	0.74	+0.8
2,745,963	+		GFF5718	0.78	+1.1
2,745,990	+		GFF5718	0.78	+0.5
2,745,991	-		GFF5718	0.78	-0.8
2,746,050	+		GFF5718	0.80	-0.5
2,746,050	+		GFF5718	0.80	+0.1
2,746,051	-		GFF5718	0.80	-0.3
2,746,051	-		GFF5718	0.80	+0.1
2,746,051	-		GFF5718	0.80	-0.4
2,746,051	-		GFF5718	0.80	-1.5
2,746,051	-		GFF5718	0.80	-0.6
2,746,117	-		GFF5718	0.82	-0.1
2,746,461	+				-1.0
2,746,461	+				+0.5
2,746,462	-				+0.0
2,746,462	-				+0.9
2,746,911	-				-0.1
2,746,911	-				+0.1
2,746,947	-				-0.1
2,746,947	-				+0.5
2,747,187	-		GFF5719	0.22	-0.4
2,747,270	+		GFF5719	0.26	-1.1
2,747,270	+		GFF5719	0.26	-0.4
2,747,270	+		GFF5719	0.26	-0.6
2,747,270	+		GFF5719	0.26	-0.3
2,747,271	-		GFF5719	0.26	-0.0
2,747,490	-		GFF5719	0.38	+0.3
2,747,693	+		GFF5719	0.49	+1.1
2,747,694	-		GFF5719	0.49	-0.9
2,747,694	-		GFF5719	0.49	-0.3
2,747,694	-		GFF5719	0.49	-0.0
2,747,694	-		GFF5719	0.49	-0.1
2,747,720	+		GFF5719	0.51	+0.9
2,747,720	+		GFF5719	0.51	-0.0
2,747,720	+		GFF5719	0.51	+0.1
2,747,720	+		GFF5719	0.51	+0.8
2,747,721	-		GFF5719	0.51	-0.1
2,747,721	-		GFF5719	0.51	-0.4
2,747,918	+		GFF5719	0.62	+0.4
2,747,919	-		GFF5719	0.62	+0.2
2,748,341	+		GFF5719	0.85	+0.4
2,748,342	-		GFF5719	0.85	+0.4
2,748,664	+				-0.3
2,748,664	+				+0.1
2,748,665	-				+1.4
2,748,665	-				-1.4
2,748,665	-				-0.1
2,748,665	-				-0.3
2,748,665	-				+0.1
2,748,665	-				+0.0
2,748,996	+		GFF5720	0.12	-0.3
2,749,091	+		GFF5720	0.24	+0.1
2,749,091	+		GFF5720	0.24	-0.4
2,749,113	-		GFF5720	0.26	+0.7
2,749,113	-		GFF5720	0.26	-0.3
2,749,222	-		GFF5720	0.40	+0.3
2,749,223	+		GFF5720	0.40	+0.1
2,749,224	-		GFF5720	0.40	-0.6
2,749,224	-		GFF5720	0.40	+0.3
2,749,224	-		GFF5720	0.40	+1.0
2,749,246	+		GFF5720	0.43	+0.0
2,749,247	-		GFF5720	0.43	+0.1
2,749,275	+		GFF5720	0.47	+0.8
2,749,275	+		GFF5720	0.47	+0.0
2,749,322	+		GFF5720	0.52	+0.4
2,749,322	+		GFF5720	0.52	+0.8
2,749,322	+		GFF5720	0.52	+0.3
2,749,322	+		GFF5720	0.52	-0.3
2,749,322	+		GFF5720	0.52	-0.4
2,749,322	+		GFF5720	0.52	-0.1
2,749,322	+		GFF5720	0.52	+0.0
2,749,322	+		GFF5720	0.52	-0.2
2,749,322	+		GFF5720	0.52	+0.2
2,749,322	+		GFF5720	0.52	+0.1
2,749,322	+		GFF5720	0.52	-1.1
2,749,322	+		GFF5720	0.52	+0.5
2,749,323	-		GFF5720	0.53	-0.7
2,749,323	-		GFF5720	0.53	-0.9
2,749,323	-		GFF5720	0.53	-0.2
2,749,323	-		GFF5720	0.53	-0.1
2,749,323	-		GFF5720	0.53	-0.1
2,749,323	-		GFF5720	0.53	+0.1
2,749,323	-		GFF5720	0.53	+0.0
2,749,323	-		GFF5720	0.53	-0.9
2,749,323	-		GFF5720	0.53	+1.0
2,749,323	-		GFF5720	0.53	+0.3
2,749,323	-		GFF5720	0.53	-0.2
2,749,323	-		GFF5720	0.53	+0.6
2,749,481	+		GFF5720	0.72	-0.3
2,749,482	-		GFF5720	0.72	-0.9
2,749,482	-		GFF5720	0.72	-0.2
2,749,482	-		GFF5720	0.72	-0.2
2,749,482	-		GFF5720	0.72	-0.2
2,749,482	-		GFF5720	0.72	-0.2
2,749,548	-		GFF5720	0.81	-0.8
2,749,548	-		GFF5720	0.81	+0.5