Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5713

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,737,220	+		GFF5712	0.67	+0.2
2,737,221	-		GFF5712	0.67	+0.6
2,737,920	-				-1.0
2,737,920	-				+0.7
2,737,965	-				-0.3
2,737,965	-				-0.3
2,737,994	+				-0.8
2,738,176	+				+0.1
2,738,186	+				+0.1
2,738,187	-				+0.2
2,738,187	-				-0.1
2,738,195	+				-0.1
2,738,678	-		GFF5713	0.36	+1.6
2,738,769	+		GFF5713	0.42	-0.1
2,738,770	-		GFF5713	0.42	+0.0
2,739,144	+		GFF5713	0.68	-0.1
2,739,144	+		GFF5713	0.68	+0.4
2,739,145	-		GFF5713	0.68	+0.0
2,739,145	-		GFF5713	0.68	+0.4
2,739,205	+		GFF5713	0.72	+0.7
2,739,206	-		GFF5713	0.72	-0.1
2,739,206	-		GFF5713	0.72	+0.0
2,739,206	-		GFF5713	0.72	+1.0
2,739,216	-		GFF5713	0.73	-0.2
2,739,216	-		GFF5713	0.73	+0.8
2,739,239	+		GFF5713	0.75	+1.1
2,739,240	-		GFF5713	0.75	+0.4
2,739,480	-				+1.1
2,739,603	+				-0.4
2,739,603	+				-0.1
2,739,603	+				+0.4
2,739,603	+				+0.2
2,739,603	+				+0.2
2,739,603	+				-0.2
2,739,604	-				-1.1
2,739,604	-				-0.0
2,739,604	-				+0.2
2,739,693	+				+0.2
2,739,749	+				-0.9
2,739,750	-				-0.0
2,740,039	+		GFF5714	0.12	-0.1
2,740,039	+		GFF5714	0.12	+1.0
2,740,039	+		GFF5714	0.12	+0.9
2,740,040	-		GFF5714	0.12	-0.1
2,740,211	-		GFF5714	0.32	-0.0
2,740,289	+		GFF5714	0.41	-0.1
2,740,289	+		GFF5714	0.41	-0.3
2,740,323	-		GFF5714	0.45	+0.2
2,740,327	+		GFF5714	0.46	-0.1
2,740,328	-		GFF5714	0.46	+0.1
2,740,594	+		GFF5714	0.77	+0.2
2,740,595	-		GFF5714	0.78	-0.1
2,740,595	-		GFF5714	0.78	-0.5
2,740,595	-		GFF5714	0.78	-0.0
2,740,595	-		GFF5714	0.78	-0.7
2,740,595	-		GFF5714	0.78	-0.1