Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5512 and GFF5513 are separated by 0 nucleotides GFF5513 and GFF5514 are separated by 137 nucleotides
GFF5512 - Two-component response regulator CreC, at 2,512,850 to 2,514,289
GFF5512
GFF5513 - Two-component response regulator CreB, at 2,514,290 to 2,514,988
GFF5513
GFF5514 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 2,515,126 to 2,517,447
GFF5514
Position (kb)
2514
2515 Strain fitness (log2 ratio)
-1
0
1 at 2513.502 kb on + strand, within GFF5512 at 2513.502 kb on + strand, within GFF5512 at 2513.502 kb on + strand, within GFF5512 at 2513.503 kb on - strand, within GFF5512 at 2513.503 kb on - strand, within GFF5512 at 2513.503 kb on - strand, within GFF5512 at 2513.514 kb on + strand, within GFF5512 at 2513.515 kb on - strand, within GFF5512 at 2513.515 kb on - strand, within GFF5512 at 2513.515 kb on - strand, within GFF5512 at 2513.763 kb on + strand, within GFF5512 at 2513.868 kb on + strand, within GFF5512 at 2513.868 kb on + strand, within GFF5512 at 2514.309 kb on + strand at 2514.310 kb on - strand at 2514.693 kb on + strand, within GFF5513 at 2514.693 kb on + strand, within GFF5513 at 2514.693 kb on + strand, within GFF5513 at 2514.693 kb on + strand, within GFF5513 at 2514.694 kb on - strand, within GFF5513 at 2514.694 kb on - strand, within GFF5513 at 2514.930 kb on + strand at 2514.930 kb on + strand at 2514.931 kb on - strand at 2514.931 kb on - strand at 2514.931 kb on - strand at 2515.024 kb on + strand at 2515.025 kb on - strand at 2515.068 kb on - strand at 2515.114 kb on + strand at 2515.273 kb on + strand at 2515.324 kb on + strand at 2515.606 kb on + strand, within GFF5514 at 2515.606 kb on + strand, within GFF5514 at 2515.606 kb on + strand, within GFF5514 at 2515.606 kb on + strand, within GFF5514 at 2515.606 kb on + strand, within GFF5514 at 2515.607 kb on - strand, within GFF5514 at 2515.607 kb on - strand, within GFF5514 at 2515.607 kb on - strand, within GFF5514 at 2515.607 kb on - strand, within GFF5514 at 2515.607 kb on - strand, within GFF5514 at 2515.666 kb on + strand, within GFF5514 at 2515.666 kb on + strand, within GFF5514 at 2515.738 kb on + strand, within GFF5514 at 2515.738 kb on + strand, within GFF5514 at 2515.739 kb on - strand, within GFF5514 at 2515.741 kb on + strand, within GFF5514 at 2515.741 kb on + strand, within GFF5514 at 2515.741 kb on + strand, within GFF5514 at 2515.742 kb on - strand, within GFF5514 at 2515.742 kb on - strand, within GFF5514 at 2515.957 kb on + strand, within GFF5514 at 2515.958 kb on - strand, within GFF5514
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 2,513,502 + GFF5512 0.45 -0.9 2,513,502 + GFF5512 0.45 -0.0 2,513,502 + GFF5512 0.45 +0.0 2,513,503 - GFF5512 0.45 +0.7 2,513,503 - GFF5512 0.45 -0.8 2,513,503 - GFF5512 0.45 -0.1 2,513,514 + GFF5512 0.46 +0.4 2,513,515 - GFF5512 0.46 +1.3 2,513,515 - GFF5512 0.46 -0.6 2,513,515 - GFF5512 0.46 -0.5 2,513,763 + GFF5512 0.63 +0.5 2,513,868 + GFF5512 0.71 -0.1 2,513,868 + GFF5512 0.71 +0.3 2,514,309 + -0.7 2,514,310 - -0.7 2,514,693 + GFF5513 0.58 +0.5 2,514,693 + GFF5513 0.58 +0.1 2,514,693 + GFF5513 0.58 +0.2 2,514,693 + GFF5513 0.58 +1.3 2,514,694 - GFF5513 0.58 -0.0 2,514,694 - GFF5513 0.58 -0.6 2,514,930 + -0.3 2,514,930 + -0.4 2,514,931 - -0.2 2,514,931 - +0.1 2,514,931 - -1.2 2,515,024 + +0.2 2,515,025 - +0.1 2,515,068 - +0.2 2,515,114 + +0.6 2,515,273 + +0.6 2,515,324 + +0.2 2,515,606 + GFF5514 0.21 -0.2 2,515,606 + GFF5514 0.21 -0.2 2,515,606 + GFF5514 0.21 +0.5 2,515,606 + GFF5514 0.21 +0.3 2,515,606 + GFF5514 0.21 -0.2 2,515,607 - GFF5514 0.21 -0.7 2,515,607 - GFF5514 0.21 +0.6 2,515,607 - GFF5514 0.21 +0.2 2,515,607 - GFF5514 0.21 -0.4 2,515,607 - GFF5514 0.21 -0.4 2,515,666 + GFF5514 0.23 +0.1 2,515,666 + GFF5514 0.23 +0.8 2,515,738 + GFF5514 0.26 +0.1 2,515,738 + GFF5514 0.26 -0.1 2,515,739 - GFF5514 0.26 -0.1 2,515,741 + GFF5514 0.26 +1.3 2,515,741 + GFF5514 0.26 +0.4 2,515,741 + GFF5514 0.26 -0.3 2,515,742 - GFF5514 0.27 +0.2 2,515,742 - GFF5514 0.27 -0.4 2,515,957 + GFF5514 0.36 +0.2 2,515,958 - GFF5514 0.36 +1.3
Or see this region's nucleotide sequence