Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5200

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,216,130	-		GFF5199	0.42	+0.3
2,216,273	+		GFF5199	0.50	-0.6
2,216,433	-		GFF5199	0.60	+0.1
2,216,433	-		GFF5199	0.60	+0.2
2,216,450	+		GFF5199	0.61	+2.0
2,216,450	+		GFF5199	0.61	-0.3
2,216,450	+		GFF5199	0.61	+1.5
2,216,450	+		GFF5199	0.61	-0.4
2,216,451	-		GFF5199	0.61	-0.4
2,216,451	-		GFF5199	0.61	+0.8
2,216,451	-		GFF5199	0.61	+0.7
2,216,451	-		GFF5199	0.61	+0.7
2,216,543	+		GFF5199	0.67	-0.1
2,216,544	-		GFF5199	0.67	-0.9
2,216,657	+		GFF5199	0.74	+0.0
2,216,657	+		GFF5199	0.74	-1.9
2,216,657	+		GFF5199	0.74	+1.3
2,216,657	+		GFF5199	0.74	-0.2
2,216,733	-		GFF5199	0.78	+0.6
2,216,744	+		GFF5199	0.79	+0.5
2,216,744	+		GFF5199	0.79	+0.4
2,217,155	-				-0.2
2,217,319	+		GFF5200	0.22	-0.2
2,217,319	+		GFF5200	0.22	+0.6
2,217,322	+		GFF5200	0.23	+0.2
2,217,322	+		GFF5200	0.23	+1.1
2,217,323	-		GFF5200	0.23	+0.6
2,217,649	+		GFF5200	0.56	+0.1
2,217,649	+		GFF5200	0.56	-0.3
2,217,650	-		GFF5200	0.56	-0.6
2,217,650	-		GFF5200	0.56	-0.3
2,218,064	-				-0.4
2,218,064	-				+0.4
2,218,086	+				+0.5
2,218,201	+		GFF5201	0.18	-0.3
2,218,567	+				-0.1
2,218,568	-				+0.1
2,218,568	-				+0.5
2,218,568	-				+0.1
2,218,748	+		GFF5202	0.29	+0.6
2,218,922	+		GFF5202	0.57	-0.4
2,218,923	-		GFF5202	0.57	+1.0