Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4892

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,904,141	+		GFF4890	0.78	-0.0
1,904,294	+		GFF4890	0.84	-0.3
1,904,295	-		GFF4890	0.84	+0.7
1,904,336	+		GFF4890	0.86	-0.4
1,904,336	+		GFF4890	0.86	-0.1
1,904,337	-		GFF4890	0.86	-0.6
1,904,337	-		GFF4890	0.86	+0.6
1,904,510	+				+0.1
1,904,510	+				+0.4
1,904,511	-				+0.2
1,904,511	-				-0.5
1,904,808	-				+0.3
1,904,808	-				+0.9
1,904,808	-				-0.1
1,904,865	+		GFF4891	0.49	+0.1
1,904,865	+		GFF4891	0.49	-0.2
1,904,865	+		GFF4891	0.49	-0.4
1,904,866	-		GFF4891	0.50	+0.2
1,904,866	-		GFF4891	0.50	+0.1
1,904,866	-		GFF4891	0.50	-0.6
1,904,935	+				+0.4
1,905,118	+				-1.5
1,905,118	+				-1.4
1,905,119	-				-2.1
1,905,119	-				-1.4
1,905,119	-				-2.5
1,905,119	-				-2.7
1,905,364	+		GFF4892	0.16	-1.8
1,905,364	+		GFF4892	0.16	-0.9
1,905,365	-		GFF4892	0.16	-2.9
1,905,365	-		GFF4892	0.16	-3.3
1,905,365	-		GFF4892	0.16	-4.1
1,905,365	-		GFF4892	0.16	-4.0
1,905,475	+		GFF4892	0.21	-3.2
1,905,475	+		GFF4892	0.21	-1.7
1,905,475	+		GFF4892	0.21	-2.1
1,905,476	-		GFF4892	0.21	-1.8
1,905,476	-		GFF4892	0.21	-2.4
1,905,476	-		GFF4892	0.21	-3.4
1,905,575	-		GFF4892	0.24	-3.8
1,905,575	-		GFF4892	0.24	-4.7
1,905,575	-		GFF4892	0.24	-2.3
1,905,628	+		GFF4892	0.27	-1.8
1,905,628	+		GFF4892	0.27	-2.9
1,905,628	+		GFF4892	0.27	-2.3
1,906,003	+		GFF4892	0.41	-2.5
1,906,003	+		GFF4892	0.41	-1.8
1,906,003	+		GFF4892	0.41	-3.5
1,906,003	+		GFF4892	0.41	-2.0
1,906,003	+		GFF4892	0.41	-4.0
1,906,003	+		GFF4892	0.41	-0.9
1,906,003	+		GFF4892	0.41	-2.0
1,906,003	+		GFF4892	0.41	-0.9
1,906,004	-		GFF4892	0.41	-1.7
1,906,004	-		GFF4892	0.41	-2.5
1,906,004	-		GFF4892	0.41	-1.6
1,906,078	+		GFF4892	0.44	-1.7
1,906,207	+		GFF4892	0.49	-2.5
1,906,207	+		GFF4892	0.49	-4.0
1,906,207	+		GFF4892	0.49	-0.6
1,906,207	+		GFF4892	0.49	-3.2
1,906,207	+		GFF4892	0.49	-2.3
1,906,207	+		GFF4892	0.49	-3.7
1,906,207	+		GFF4892	0.49	-1.7
1,906,207	+		GFF4892	0.49	-3.1
1,906,208	-		GFF4892	0.49	-1.1
1,906,208	-		GFF4892	0.49	-4.5
1,906,208	-		GFF4892	0.49	-2.2
1,906,208	-		GFF4892	0.49	-2.4
1,906,312	+		GFF4892	0.53	-0.7
1,906,313	-		GFF4892	0.53	-2.1
1,906,313	-		GFF4892	0.53	-2.9
1,906,405	+		GFF4892	0.57	-1.6
1,906,405	+		GFF4892	0.57	-3.1
1,906,406	-		GFF4892	0.57	-4.4
1,906,406	-		GFF4892	0.57	-2.9
1,906,406	-		GFF4892	0.57	-2.3
1,906,406	-		GFF4892	0.57	-2.2
1,906,406	-		GFF4892	0.57	-0.9
1,906,609	+		GFF4892	0.65	-2.3
1,906,609	+		GFF4892	0.65	-2.0
1,906,801	+		GFF4892	0.72	-2.9
1,906,801	+		GFF4892	0.72	-1.8
1,906,801	+		GFF4892	0.72	-4.8
1,906,801	+		GFF4892	0.72	-0.4
1,906,802	-		GFF4892	0.72	-3.0
1,906,802	-		GFF4892	0.72	-4.3
1,906,802	-		GFF4892	0.72	-2.6
1,906,802	-		GFF4892	0.72	-3.7
1,907,041	+		GFF4892	0.82	-1.1
1,907,041	+		GFF4892	0.82	-3.3
1,907,041	+		GFF4892	0.82	-2.0
1,907,041	+		GFF4892	0.82	-1.1
1,907,042	-		GFF4892	0.82	-1.9
1,907,042	-		GFF4892	0.82	-0.9
1,907,042	-		GFF4892	0.82	-2.0
1,907,042	-		GFF4892	0.82	-3.1
1,907,042	-		GFF4892	0.82	-2.1
1,907,042	-		GFF4892	0.82	-0.9
1,907,042	-		GFF4892	0.82	-2.9
1,907,216	-		GFF4892	0.89	-4.2
1,907,272	+				-3.3
1,907,272	+				-4.6
1,907,273	-				-2.7
1,907,284	+				-1.1
1,907,284	+				-3.6
1,907,284	+				-1.1
1,907,284	+				-1.4
1,907,284	+				-3.5
1,907,285	-				-1.9
1,907,285	-				-1.1
1,907,285	-				-1.1
1,907,285	-				-3.0
1,907,377	+				-2.2
1,907,377	+				-1.1
1,907,377	+				-1.6
1,907,377	+				-1.6
1,907,377	+				-2.3
1,907,377	+				-2.3
1,907,378	-				-1.1
1,907,378	-				-1.8
1,907,378	-				-2.1
1,907,378	-				-0.1
1,907,378	-				-1.5
1,907,378	-				-2.0
1,907,532	+				-2.3
1,907,532	+				-1.7
1,907,640	+		GFF4893	0.22	-1.7
1,907,641	-		GFF4893	0.22	-4.0
1,907,682	-		GFF4893	0.29	-3.3