Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF472 and GFF473 overlap by 4 nucleotides GFF473 and GFF474 overlap by 4 nucleotides GFF474 and GFF475 are separated by 4 nucleotides
GFF472 - hypothetical protein, at 136,598 to 136,804
GFF472
GFF473 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 136,801 to 137,625
GFF473
GFF474 - Alkanesulfonates transport system permease protein, at 137,622 to 138,464
GFF474
GFF475 - Alkanesulfonates-binding protein, at 138,469 to 139,488
GFF475
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1 at 136.632 kb on + strand, within GFF472 at 136.632 kb on + strand, within GFF472 at 136.779 kb on + strand, within GFF472 at 136.967 kb on + strand, within GFF473 at 137.319 kb on - strand, within GFF473 at 137.319 kb on - strand, within GFF473 at 137.319 kb on - strand, within GFF473 at 137.334 kb on - strand, within GFF473 at 137.520 kb on - strand, within GFF473 at 137.597 kb on + strand at 137.716 kb on + strand, within GFF474 at 137.716 kb on + strand, within GFF474 at 137.959 kb on + strand, within GFF474 at 138.593 kb on + strand, within GFF475 at 138.593 kb on + strand, within GFF475 at 138.594 kb on - strand, within GFF475 at 138.686 kb on + strand, within GFF475 at 138.687 kb on - strand, within GFF475 at 138.704 kb on + strand, within GFF475 at 138.809 kb on + strand, within GFF475 at 138.809 kb on + strand, within GFF475 at 138.809 kb on + strand, within GFF475
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 136,632 + GFF472 0.16 +0.4 136,632 + GFF472 0.16 +0.2 136,779 + GFF472 0.87 +0.5 136,967 + GFF473 0.20 -0.2 137,319 - GFF473 0.63 -0.6 137,319 - GFF473 0.63 -0.2 137,319 - GFF473 0.63 +0.6 137,334 - GFF473 0.65 +0.5 137,520 - GFF473 0.87 -0.5 137,597 + -0.4 137,716 + GFF474 0.11 -0.9 137,716 + GFF474 0.11 -0.0 137,959 + GFF474 0.40 +0.5 138,593 + GFF475 0.12 +0.5 138,593 + GFF475 0.12 +0.1 138,594 - GFF475 0.12 +0.0 138,686 + GFF475 0.21 +1.0 138,687 - GFF475 0.21 +0.5 138,704 + GFF475 0.23 -0.2 138,809 + GFF475 0.33 -1.3 138,809 + GFF475 0.33 +0.8 138,809 + GFF475 0.33 +0.7
Or see this region's nucleotide sequence