Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4131

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,041,989	+				-0.1
1,041,989	+				-0.6
1,041,990	-				+0.0
1,041,995	+				-0.4
1,041,996	-				+0.1
1,041,996	-				+0.2
1,042,110	-				-0.6
1,042,110	-				-1.7
1,042,367	+		GFF4131	0.18	-2.2
1,042,367	+		GFF4131	0.18	-0.1
1,042,389	-		GFF4131	0.19	-0.2
1,042,389	-		GFF4131	0.19	-0.4
1,042,595	+		GFF4131	0.32	-0.3
1,042,595	+		GFF4131	0.32	+1.5
1,042,595	+		GFF4131	0.32	-1.4
1,042,595	+		GFF4131	0.32	+1.3
1,042,596	-		GFF4131	0.32	-0.9
1,042,680	-		GFF4131	0.38	-0.4
1,042,680	-		GFF4131	0.38	-0.7
1,042,868	+		GFF4131	0.50	+0.5
1,042,868	+		GFF4131	0.50	-1.4
1,042,868	+		GFF4131	0.50	+0.1
1,042,869	-		GFF4131	0.50	-0.7
1,042,869	-		GFF4131	0.50	-0.1
1,042,869	-		GFF4131	0.50	+1.5
1,042,869	-		GFF4131	0.50	-0.8
1,043,214	-		GFF4131	0.72	-1.1
1,043,303	+		GFF4131	0.78	+0.9
1,043,303	+		GFF4131	0.78	-0.1
1,043,351	+		GFF4131	0.81	+0.0
1,043,352	-		GFF4131	0.81	-0.7
1,043,352	-		GFF4131	0.81	-0.2
1,043,381	+		GFF4131	0.83	+0.3
1,043,381	+		GFF4131	0.83	+0.3
1,043,382	-		GFF4131	0.83	-0.3
1,043,382	-		GFF4131	0.83	-0.2
1,043,382	-		GFF4131	0.83	-0.1
1,043,382	-		GFF4131	0.83	-0.6
1,043,382	-		GFF4131	0.83	-0.5
1,043,624	+				+1.0
1,043,624	+				+1.0
1,043,624	+				-1.3
1,043,625	-				-0.2
1,043,774	-				+0.2
1,043,797	+				+0.5
1,043,797	+				-0.0
1,043,798	-				+0.0
1,043,918	+				+0.2
1,043,919	-				+0.6
1,043,919	-				-0.2
1,044,243	-		GFF4132	0.69	+1.3
1,044,374	+				-0.5
1,044,374	+				+0.5
1,044,374	+				-0.7
1,044,374	+				-0.2
1,044,374	+				-0.8
1,044,374	+				-0.0
1,044,375	-				-0.1
1,044,375	-				+0.2
1,044,375	-				-0.4
1,044,375	-				-0.2
1,044,375	-				+0.4
1,044,375	-				-0.8
1,044,375	-				-1.1
1,044,375	-				-0.3
1,044,375	-				-0.3
1,044,375	-				-0.0
1,044,419	+				+0.2
1,044,419	+				-0.0
1,044,419	+				-0.9
1,044,448	+				+0.4
1,044,448	+				+0.6
1,044,448	+				+0.6
1,044,449	-				+0.3
1,044,479	-				+0.3