Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3916

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3915 and GFF3916 are separated by 46 nucleotidesGFF3916 and GFF3917 are separated by 5 nucleotidesGFF3917 and GFF3918 are separated by 105 nucleotidesGFF3918 and GFF3919 are separated by 119 nucleotides GFF3915 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 828,118 to 829,707 GFF3915 GFF3916 - Acetate permease ActP (cation/acetate symporter), at 829,754 to 831,451 GFF3916 GFF3917 - Putative membrane protein, clustering with ActP, at 831,457 to 831,765 GFF3917 GFF3918 - hypothetical protein, at 831,871 to 832,053 GFF3918 GFF3919 - FIG137360: hypothetical protein, at 832,173 to 832,994 GFF3919 Position (kb) 829 830 831 832Strain fitness (log2 ratio) -2 -1 0 1at 828.805 kb on + strand, within GFF3915at 828.805 kb on + strand, within GFF3915at 828.806 kb on - strand, within GFF3915at 828.806 kb on - strand, within GFF3915at 828.806 kb on - strand, within GFF3915at 828.889 kb on + strand, within GFF3915at 828.889 kb on + strand, within GFF3915at 828.889 kb on + strand, within GFF3915at 828.889 kb on + strand, within GFF3915at 828.889 kb on + strand, within GFF3915at 828.889 kb on + strand, within GFF3915at 828.890 kb on - strand, within GFF3915at 828.890 kb on - strand, within GFF3915at 829.403 kb on - strand, within GFF3915at 829.597 kb on + strandat 829.597 kb on + strandat 829.597 kb on + strandat 829.598 kb on - strandat 829.598 kb on - strandat 829.598 kb on - strandat 829.598 kb on - strandat 829.917 kb on + strandat 829.918 kb on - strandat 829.918 kb on - strandat 830.131 kb on - strand, within GFF3916at 830.250 kb on + strand, within GFF3916at 830.250 kb on + strand, within GFF3916at 830.251 kb on - strand, within GFF3916at 830.251 kb on - strand, within GFF3916at 830.251 kb on - strand, within GFF3916at 830.251 kb on - strand, within GFF3916at 830.487 kb on + strand, within GFF3916at 830.487 kb on + strand, within GFF3916at 830.487 kb on + strand, within GFF3916at 830.487 kb on + strand, within GFF3916at 830.488 kb on - strand, within GFF3916at 830.488 kb on - strand, within GFF3916at 830.488 kb on - strand, within GFF3916at 830.493 kb on + strand, within GFF3916at 830.837 kb on + strand, within GFF3916at 830.874 kb on + strand, within GFF3916at 830.874 kb on + strand, within GFF3916at 830.874 kb on + strand, within GFF3916at 830.874 kb on + strand, within GFF3916at 830.874 kb on + strand, within GFF3916at 830.874 kb on + strand, within GFF3916at 830.875 kb on - strand, within GFF3916at 830.875 kb on - strand, within GFF3916at 830.875 kb on - strand, within GFF3916at 830.875 kb on - strand, within GFF3916at 830.875 kb on - strand, within GFF3916at 830.875 kb on - strand, within GFF3916at 830.917 kb on - strand, within GFF3916at 830.977 kb on - strand, within GFF3916at 830.977 kb on - strand, within GFF3916at 831.141 kb on + strand, within GFF3916at 831.141 kb on + strand, within GFF3916at 831.210 kb on + strand, within GFF3916at 831.210 kb on + strand, within GFF3916at 831.210 kb on + strand, within GFF3916at 831.211 kb on - strand, within GFF3916at 831.211 kb on - strand, within GFF3916at 831.211 kb on - strand, within GFF3916at 831.315 kb on + strandat 831.315 kb on + strandat 831.315 kb on + strandat 831.315 kb on + strandat 831.315 kb on + strandat 831.316 kb on - strandat 831.316 kb on - strandat 831.316 kb on - strandat 831.316 kb on - strandat 831.316 kb on - strandat 831.316 kb on - strandat 831.524 kb on + strand, within GFF3917at 831.524 kb on + strand, within GFF3917at 831.524 kb on + strand, within GFF3917at 831.654 kb on - strand, within GFF3917at 831.654 kb on - strand, within GFF3917at 831.654 kb on - strand, within GFF3917at 831.656 kb on + strand, within GFF3917at 831.656 kb on + strand, within GFF3917at 831.656 kb on + strand, within GFF3917at 831.657 kb on - strand, within GFF3917at 831.723 kb on - strand, within GFF3917at 831.723 kb on - strand, within GFF3917at 831.803 kb on + strandat 831.817 kb on + strandat 831.817 kb on + strandat 831.817 kb on + strandat 831.818 kb on - strandat 831.872 kb on + strandat 831.872 kb on + strandat 831.873 kb on - strandat 831.873 kb on - strandat 832.062 kb on + strandat 832.062 kb on + strandat 832.062 kb on + strandat 832.062 kb on + strandat 832.063 kb on - strandat 832.063 kb on - strandat 832.177 kb on + strandat 832.177 kb on + strandat 832.327 kb on + strand, within GFF3919

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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828,805 + GFF3915 0.43 -0.5
828,805 + GFF3915 0.43 +0.2
828,806 - GFF3915 0.43 -0.2
828,806 - GFF3915 0.43 +0.3
828,806 - GFF3915 0.43 -0.2
828,889 + GFF3915 0.48 +0.1
828,889 + GFF3915 0.48 +0.5
828,889 + GFF3915 0.48 -0.4
828,889 + GFF3915 0.48 +0.8
828,889 + GFF3915 0.48 -0.0
828,889 + GFF3915 0.48 -0.4
828,890 - GFF3915 0.49 -0.3
828,890 - GFF3915 0.49 -0.3
829,403 - GFF3915 0.81 -0.5
829,597 + +0.2
829,597 + -0.2
829,597 + -0.9
829,598 - -0.1
829,598 - -0.1
829,598 - -0.5
829,598 - -0.0
829,917 + -0.4
829,918 - +0.8
829,918 - +0.1
830,131 - GFF3916 0.22 +0.6
830,250 + GFF3916 0.29 +0.7
830,250 + GFF3916 0.29 -0.4
830,251 - GFF3916 0.29 -0.0
830,251 - GFF3916 0.29 -0.1
830,251 - GFF3916 0.29 +0.4
830,251 - GFF3916 0.29 +0.2
830,487 + GFF3916 0.43 -0.0
830,487 + GFF3916 0.43 -1.3
830,487 + GFF3916 0.43 +0.7
830,487 + GFF3916 0.43 +0.7
830,488 - GFF3916 0.43 +0.0
830,488 - GFF3916 0.43 +0.1
830,488 - GFF3916 0.43 +0.5
830,493 + GFF3916 0.44 -0.3
830,837 + GFF3916 0.64 -0.3
830,874 + GFF3916 0.66 +0.9
830,874 + GFF3916 0.66 +0.1
830,874 + GFF3916 0.66 +0.5
830,874 + GFF3916 0.66 -0.1
830,874 + GFF3916 0.66 +0.9
830,874 + GFF3916 0.66 -0.8
830,875 - GFF3916 0.66 +0.2
830,875 - GFF3916 0.66 +0.1
830,875 - GFF3916 0.66 +0.4
830,875 - GFF3916 0.66 -0.2
830,875 - GFF3916 0.66 +0.1
830,875 - GFF3916 0.66 -0.0
830,917 - GFF3916 0.68 +0.0
830,977 - GFF3916 0.72 -1.0
830,977 - GFF3916 0.72 -0.4
831,141 + GFF3916 0.82 +0.1
831,141 + GFF3916 0.82 +0.5
831,210 + GFF3916 0.86 +0.4
831,210 + GFF3916 0.86 +0.6
831,210 + GFF3916 0.86 -0.0
831,211 - GFF3916 0.86 -0.1
831,211 - GFF3916 0.86 +0.2
831,211 - GFF3916 0.86 +0.0
831,315 + +0.5
831,315 + -0.1
831,315 + +0.0
831,315 + +0.6
831,315 + -0.0
831,316 - -0.9
831,316 - -1.0
831,316 - -2.2
831,316 - +0.7
831,316 - -0.2
831,316 - +0.2
831,524 + GFF3917 0.22 +0.1
831,524 + GFF3917 0.22 +0.4
831,524 + GFF3917 0.22 -0.6
831,654 - GFF3917 0.64 -0.4
831,654 - GFF3917 0.64 +0.2
831,654 - GFF3917 0.64 +0.8
831,656 + GFF3917 0.64 -0.4
831,656 + GFF3917 0.64 -0.2
831,656 + GFF3917 0.64 +0.8
831,657 - GFF3917 0.65 -0.4
831,723 - GFF3917 0.86 +0.3
831,723 - GFF3917 0.86 +0.0
831,803 + -0.5
831,817 + -1.4
831,817 + +0.1
831,817 + +0.3
831,818 - +1.5
831,872 + -0.2
831,872 + +0.3
831,873 - +1.4
831,873 - +1.2
832,062 + +0.2
832,062 + -0.5
832,062 + +0.6
832,062 + +0.1
832,063 - +1.2
832,063 - +0.3
832,177 + +0.2
832,177 + -1.1
832,327 + GFF3919 0.19 +0.3

Or see this region's nucleotide sequence