Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3881 and GFF3882 are separated by 14 nucleotides GFF3882 and GFF3883 are separated by 12 nucleotides
GFF3881 - Lipoprotein NlpD, at 795,515 to 796,339
GFF3881
GFF3882 - Polysaccharide biosynthesis protein WlaX, at 796,354 to 797,139
GFF3882
GFF3883 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 797,152 to 798,648
GFF3883
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2 at 795.668 kb on + strand, within GFF3881 at 795.668 kb on + strand, within GFF3881 at 795.669 kb on - strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.672 kb on - strand, within GFF3881 at 795.672 kb on - strand, within GFF3881 at 796.103 kb on + strand, within GFF3881 at 796.104 kb on - strand, within GFF3881 at 796.104 kb on - strand, within GFF3881 at 796.163 kb on + strand, within GFF3881 at 796.163 kb on + strand, within GFF3881 at 796.164 kb on - strand, within GFF3881 at 796.175 kb on + strand, within GFF3881 at 796.703 kb on - strand, within GFF3882 at 796.738 kb on + strand, within GFF3882 at 796.738 kb on + strand, within GFF3882 at 796.738 kb on + strand, within GFF3882 at 796.739 kb on - strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.783 kb on + strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.784 kb on - strand, within GFF3882 at 796.796 kb on - strand, within GFF3882 at 796.837 kb on + strand, within GFF3882 at 796.837 kb on + strand, within GFF3882 at 796.837 kb on + strand, within GFF3882 at 796.837 kb on + strand, within GFF3882 at 796.838 kb on - strand, within GFF3882 at 796.838 kb on - strand, within GFF3882 at 796.838 kb on - strand, within GFF3882 at 796.933 kb on + strand, within GFF3882 at 796.934 kb on - strand, within GFF3882 at 796.934 kb on - strand, within GFF3882 at 796.993 kb on + strand, within GFF3882 at 796.993 kb on + strand, within GFF3882 at 796.993 kb on + strand, within GFF3882 at 796.994 kb on - strand, within GFF3882 at 796.994 kb on - strand, within GFF3882 at 796.994 kb on - strand, within GFF3882 at 796.994 kb on - strand, within GFF3882 at 796.994 kb on - strand, within GFF3882 at 797.002 kb on + strand, within GFF3882 at 797.002 kb on + strand, within GFF3882 at 797.003 kb on - strand, within GFF3882 at 797.003 kb on - strand, within GFF3882 at 797.003 kb on - strand, within GFF3882 at 797.003 kb on - strand, within GFF3882 at 797.003 kb on - strand, within GFF3882 at 797.003 kb on - strand, within GFF3882 at 797.048 kb on - strand, within GFF3882 at 797.048 kb on - strand, within GFF3882 at 797.119 kb on + strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.692 kb on + strand, within GFF3883 at 797.983 kb on + strand, within GFF3883 at 797.983 kb on + strand, within GFF3883 at 797.983 kb on + strand, within GFF3883 at 797.983 kb on + strand, within GFF3883 at 797.984 kb on - strand, within GFF3883 at 797.984 kb on - strand, within GFF3883 at 797.984 kb on - strand, within GFF3883 at 797.984 kb on - strand, within GFF3883
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 795,668 + GFF3881 0.19 +0.3 795,668 + GFF3881 0.19 -1.1 795,669 - GFF3881 0.19 -0.1 795,671 + GFF3881 0.19 +0.2 795,671 + GFF3881 0.19 -0.5 795,671 + GFF3881 0.19 +1.7 795,671 + GFF3881 0.19 -0.1 795,672 - GFF3881 0.19 -0.1 795,672 - GFF3881 0.19 -0.5 796,103 + GFF3881 0.71 -0.2 796,104 - GFF3881 0.71 -0.1 796,104 - GFF3881 0.71 +0.1 796,163 + GFF3881 0.79 +1.1 796,163 + GFF3881 0.79 +0.6 796,164 - GFF3881 0.79 -1.1 796,175 + GFF3881 0.80 -0.7 796,703 - GFF3882 0.44 -0.1 796,738 + GFF3882 0.49 +1.1 796,738 + GFF3882 0.49 -0.1 796,738 + GFF3882 0.49 +0.3 796,739 - GFF3882 0.49 -0.2 796,783 + GFF3882 0.55 -0.4 796,783 + GFF3882 0.55 -0.9 796,783 + GFF3882 0.55 -0.7 796,783 + GFF3882 0.55 +1.3 796,783 + GFF3882 0.55 +0.3 796,783 + GFF3882 0.55 +1.3 796,783 + GFF3882 0.55 -0.3 796,783 + GFF3882 0.55 -1.3 796,783 + GFF3882 0.55 -0.0 796,784 - GFF3882 0.55 +0.3 796,784 - GFF3882 0.55 +0.2 796,784 - GFF3882 0.55 +1.5 796,784 - GFF3882 0.55 +0.0 796,784 - GFF3882 0.55 -0.1 796,784 - GFF3882 0.55 +0.1 796,784 - GFF3882 0.55 +0.4 796,784 - GFF3882 0.55 -2.4 796,796 - GFF3882 0.56 +2.1 796,837 + GFF3882 0.61 +1.0 796,837 + GFF3882 0.61 +0.1 796,837 + GFF3882 0.61 +0.2 796,837 + GFF3882 0.61 -0.2 796,838 - GFF3882 0.62 -1.3 796,838 - GFF3882 0.62 -0.4 796,838 - GFF3882 0.62 -0.1 796,933 + GFF3882 0.74 +0.7 796,934 - GFF3882 0.74 +0.3 796,934 - GFF3882 0.74 -0.3 796,993 + GFF3882 0.81 -0.2 796,993 + GFF3882 0.81 -0.0 796,993 + GFF3882 0.81 +0.0 796,994 - GFF3882 0.81 -0.2 796,994 - GFF3882 0.81 +0.2 796,994 - GFF3882 0.81 -0.4 796,994 - GFF3882 0.81 +0.1 796,994 - GFF3882 0.81 +0.1 797,002 + GFF3882 0.82 +0.2 797,002 + GFF3882 0.82 +0.2 797,003 - GFF3882 0.83 -0.1 797,003 - GFF3882 0.83 +0.7 797,003 - GFF3882 0.83 +0.5 797,003 - GFF3882 0.83 +1.2 797,003 - GFF3882 0.83 +0.6 797,003 - GFF3882 0.83 -0.2 797,048 - GFF3882 0.88 +1.4 797,048 - GFF3882 0.88 +0.3 797,119 + -0.3 797,120 - +0.3 797,120 - +0.0 797,120 - +0.6 797,120 - -0.6 797,692 + GFF3883 0.36 +0.7 797,983 + GFF3883 0.56 -0.4 797,983 + GFF3883 0.56 -0.8 797,983 + GFF3883 0.56 -1.3 797,983 + GFF3883 0.56 -0.8 797,984 - GFF3883 0.56 -0.5 797,984 - GFF3883 0.56 -1.3 797,984 - GFF3883 0.56 +1.1 797,984 - GFF3883 0.56 +0.5
Or see this region's nucleotide sequence