Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3815 and GFF3816 are separated by 23 nucleotides GFF3816 and GFF3817 are separated by 216 nucleotides GFF3817 and GFF3818 are separated by 5 nucleotides GFF3818 and GFF3819 are separated by 9 nucleotides
GFF3815 - hypothetical protein, at 718,400 to 720,172
GFF3815
GFF3816 - Aldo-keto reductase, at 720,196 to 721,194
GFF3816
GFF3817 - hypothetical protein, at 721,411 to 721,872
GFF3817
GFF3818 - hypothetical protein, at 721,878 to 722,180
GFF3818
GFF3819 - DNA-binding response regulator, at 722,190 to 722,897
GFF3819
Position (kb) 720
721
722 Strain fitness (log2 ratio) -2
-1
0
1 at 719.570 kb on + strand, within GFF3815 at 719.571 kb on - strand, within GFF3815 at 719.660 kb on + strand, within GFF3815 at 719.660 kb on + strand, within GFF3815 at 719.660 kb on + strand, within GFF3815 at 719.660 kb on - strand, within GFF3815 at 720.268 kb on + strand at 720.268 kb on + strand at 720.559 kb on + strand, within GFF3816 at 720.559 kb on + strand, within GFF3816 at 720.559 kb on + strand, within GFF3816 at 720.559 kb on + strand, within GFF3816 at 720.560 kb on - strand, within GFF3816 at 720.560 kb on - strand, within GFF3816 at 720.562 kb on + strand, within GFF3816 at 720.562 kb on + strand, within GFF3816 at 720.562 kb on + strand, within GFF3816 at 720.562 kb on - strand, within GFF3816 at 720.563 kb on - strand, within GFF3816 at 720.563 kb on - strand, within GFF3816 at 720.563 kb on - strand, within GFF3816 at 720.728 kb on - strand, within GFF3816 at 720.728 kb on - strand, within GFF3816 at 720.728 kb on - strand, within GFF3816 at 720.823 kb on + strand, within GFF3816 at 720.824 kb on - strand, within GFF3816 at 721.189 kb on + strand at 721.189 kb on + strand at 721.189 kb on + strand at 721.190 kb on - strand at 721.190 kb on - strand at 721.316 kb on - strand at 721.322 kb on - strand at 721.792 kb on + strand, within GFF3817 at 721.792 kb on + strand, within GFF3817 at 721.793 kb on - strand, within GFF3817
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 719,570 + GFF3815 0.66 -0.2 719,571 - GFF3815 0.66 -0.1 719,660 + GFF3815 0.71 +0.4 719,660 + GFF3815 0.71 +0.2 719,660 + GFF3815 0.71 +0.4 719,660 - GFF3815 0.71 -0.3 720,268 + +0.1 720,268 + -0.8 720,559 + GFF3816 0.36 -0.0 720,559 + GFF3816 0.36 -0.3 720,559 + GFF3816 0.36 +0.1 720,559 + GFF3816 0.36 +0.0 720,560 - GFF3816 0.36 +0.2 720,560 - GFF3816 0.36 +0.6 720,562 + GFF3816 0.37 +0.2 720,562 + GFF3816 0.37 -0.2 720,562 + GFF3816 0.37 +0.2 720,562 - GFF3816 0.37 +1.2 720,563 - GFF3816 0.37 -0.3 720,563 - GFF3816 0.37 -2.1 720,563 - GFF3816 0.37 +0.8 720,728 - GFF3816 0.53 -1.3 720,728 - GFF3816 0.53 +0.6 720,728 - GFF3816 0.53 -0.3 720,823 + GFF3816 0.63 -0.7 720,824 - GFF3816 0.63 -1.0 721,189 + -0.9 721,189 + -0.1 721,189 + -0.5 721,190 - +0.2 721,190 - -0.8 721,316 - -0.4 721,322 - +0.1 721,792 + GFF3817 0.82 -0.0 721,792 + GFF3817 0.82 +0.2 721,793 - GFF3817 0.83 +0.2
Or see this region's nucleotide sequence