Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF377

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF376 and GFF377 are separated by 155 nucleotidesGFF377 and GFF378 are separated by 134 nucleotidesGFF378 and GFF379 are separated by 51 nucleotides GFF376 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 38,786 to 39,637 GFF376 GFF377 - Choline dehydrogenase (EC 1.1.99.1), at 39,793 to 41,511 GFF377 GFF378 - Antibiotic biosynthesis monooxygenase, at 41,646 to 41,945 GFF378 GFF379 - Arginase (EC 3.5.3.1), at 41,997 to 42,914 GFF379 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 38.796 kb on + strandat 38.796 kb on + strandat 38.827 kb on - strandat 38.827 kb on - strandat 38.868 kb on + strandat 38.895 kb on + strand, within GFF376at 38.896 kb on - strand, within GFF376at 39.405 kb on + strand, within GFF376at 39.405 kb on + strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.406 kb on - strand, within GFF376at 39.698 kb on - strandat 39.734 kb on + strandat 39.735 kb on - strandat 39.803 kb on - strandat 39.803 kb on - strandat 39.803 kb on - strandat 40.016 kb on - strand, within GFF377at 40.069 kb on + strand, within GFF377at 40.093 kb on + strand, within GFF377at 40.094 kb on - strand, within GFF377at 40.150 kb on + strand, within GFF377at 40.151 kb on - strand, within GFF377at 40.285 kb on + strand, within GFF377at 40.337 kb on - strand, within GFF377at 40.337 kb on - strand, within GFF377at 40.384 kb on + strand, within GFF377at 40.384 kb on + strand, within GFF377at 40.385 kb on - strand, within GFF377at 40.385 kb on - strand, within GFF377at 40.385 kb on - strand, within GFF377at 40.949 kb on - strand, within GFF377at 41.183 kb on + strand, within GFF377at 41.218 kb on + strand, within GFF377at 41.218 kb on + strand, within GFF377at 41.218 kb on + strand, within GFF377at 41.403 kb on + strandat 41.403 kb on + strandat 41.404 kb on - strandat 41.404 kb on - strandat 41.404 kb on - strandat 41.404 kb on - strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.760 kb on + strand, within GFF378at 41.761 kb on - strand, within GFF378at 41.796 kb on + strand, within GFF378at 41.796 kb on + strand, within GFF378at 41.796 kb on + strand, within GFF378at 41.796 kb on + strand, within GFF378at 41.797 kb on - strand, within GFF378at 41.797 kb on - strand, within GFF378at 41.797 kb on - strand, within GFF378at 41.991 kb on - strandat 42.317 kb on - strand, within GFF379at 42.317 kb on - strand, within GFF379at 42.317 kb on - strand, within GFF379

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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38,796 + -0.2
38,796 + -0.1
38,827 - +0.1
38,827 - +0.8
38,868 + -0.5
38,895 + GFF376 0.13 -1.8
38,896 - GFF376 0.13 -0.4
39,405 + GFF376 0.73 +0.1
39,405 + GFF376 0.73 +0.0
39,406 - GFF376 0.73 -0.2
39,406 - GFF376 0.73 -0.1
39,406 - GFF376 0.73 +0.5
39,406 - GFF376 0.73 +0.7
39,698 - -0.8
39,734 + +0.2
39,735 - +0.2
39,803 - +1.1
39,803 - -0.5
39,803 - +0.6
40,016 - GFF377 0.13 +0.3
40,069 + GFF377 0.16 -0.6
40,093 + GFF377 0.17 +0.3
40,094 - GFF377 0.18 +0.0
40,150 + GFF377 0.21 +0.6
40,151 - GFF377 0.21 -1.0
40,285 + GFF377 0.29 -0.1
40,337 - GFF377 0.32 -0.2
40,337 - GFF377 0.32 -0.8
40,384 + GFF377 0.34 -0.5
40,384 + GFF377 0.34 -0.4
40,385 - GFF377 0.34 -1.1
40,385 - GFF377 0.34 -0.7
40,385 - GFF377 0.34 +0.3
40,949 - GFF377 0.67 -0.7
41,183 + GFF377 0.81 +0.2
41,218 + GFF377 0.83 +0.0
41,218 + GFF377 0.83 +0.2
41,218 + GFF377 0.83 -0.5
41,403 + +0.2
41,403 + +0.0
41,404 - -2.4
41,404 - -0.3
41,404 - +0.8
41,404 - -1.3
41,515 + +0.8
41,515 + +0.1
41,515 + +0.2
41,515 + +0.7
41,515 + +0.5
41,515 + +0.2
41,515 + +0.9
41,515 + +0.5
41,515 + -0.2
41,516 - +0.4
41,516 - +0.1
41,516 - +0.1
41,516 - +0.5
41,516 - -0.0
41,516 - -0.6
41,516 - -0.5
41,516 - +0.2
41,516 - +0.5
41,516 - +0.4
41,516 - +0.7
41,516 - +1.0
41,760 + GFF378 0.38 -1.2
41,761 - GFF378 0.38 +0.5
41,796 + GFF378 0.50 +0.4
41,796 + GFF378 0.50 -1.3
41,796 + GFF378 0.50 +0.3
41,796 + GFF378 0.50 -0.1
41,797 - GFF378 0.50 -0.3
41,797 - GFF378 0.50 +0.7
41,797 - GFF378 0.50 +0.3
41,991 - +0.1
42,317 - GFF379 0.35 -0.8
42,317 - GFF379 0.35 -0.8
42,317 - GFF379 0.35 -1.0

Or see this region's nucleotide sequence