Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3753 and GFF3754 are separated by 149 nucleotides GFF3754 and GFF3755 are separated by 59 nucleotides GFF3755 and GFF3756 are separated by 43 nucleotides
GFF3753 - FIG00349159: hypothetical protein, at 647,758 to 647,928
GFF3753
GFF3754 - Transcriptional regulator, MarR family, at 648,078 to 648,560
GFF3754
GFF3755 - Outer membrane component of tripartite multidrug resistance system, at 648,620 to 650,071
GFF3755
GFF3756 - Membrane fusion component of tripartite multidrug resistance system, at 650,115 to 651,410
GFF3756
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -1
0
1 at 647.645 kb on + strand at 647.645 kb on + strand at 647.714 kb on + strand at 647.721 kb on + strand at 647.721 kb on + strand at 647.722 kb on - strand at 647.722 kb on - strand at 647.722 kb on - strand at 647.725 kb on - strand at 647.725 kb on - strand at 647.772 kb on - strand at 648.066 kb on + strand at 648.067 kb on - strand at 648.067 kb on - strand at 648.108 kb on + strand at 648.147 kb on + strand, within GFF3754 at 648.148 kb on - strand, within GFF3754 at 648.180 kb on + strand, within GFF3754 at 648.181 kb on - strand, within GFF3754 at 648.181 kb on - strand, within GFF3754 at 648.511 kb on - strand, within GFF3754 at 648.605 kb on + strand at 648.636 kb on + strand at 649.005 kb on - strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.583 kb on + strand, within GFF3755 at 649.584 kb on - strand, within GFF3755 at 649.584 kb on - strand, within GFF3755 at 649.664 kb on + strand, within GFF3755 at 649.766 kb on + strand, within GFF3755 at 649.766 kb on + strand, within GFF3755 at 649.767 kb on - strand, within GFF3755 at 649.925 kb on + strand, within GFF3755 at 650.085 kb on + strand at 650.085 kb on + strand at 650.085 kb on + strand at 650.086 kb on - strand at 650.086 kb on - strand at 650.269 kb on - strand, within GFF3756 at 650.457 kb on + strand, within GFF3756 at 650.458 kb on - strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.817 kb on + strand, within GFF3756 at 650.817 kb on + strand, within GFF3756 at 650.980 kb on - strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 650.997 kb on + strand, within GFF3756
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 647,645 + +0.5 647,645 + -0.1 647,714 + -0.5 647,721 + -0.1 647,721 + -1.2 647,722 - +0.5 647,722 - -0.1 647,722 - -0.2 647,725 - -0.5 647,725 - -0.2 647,772 - +0.9 648,066 + +0.3 648,067 - +0.5 648,067 - -0.1 648,108 + +0.3 648,147 + GFF3754 0.14 -0.4 648,148 - GFF3754 0.14 +1.6 648,180 + GFF3754 0.21 -0.6 648,181 - GFF3754 0.21 -0.5 648,181 - GFF3754 0.21 -0.3 648,511 - GFF3754 0.90 -0.1 648,605 + +1.5 648,636 + +0.2 649,005 - GFF3755 0.27 -0.2 649,187 + GFF3755 0.39 +0.5 649,187 + GFF3755 0.39 -0.3 649,187 + GFF3755 0.39 +0.7 649,187 + GFF3755 0.39 +0.2 649,187 + GFF3755 0.39 -0.2 649,187 + GFF3755 0.39 +0.4 649,188 - GFF3755 0.39 +0.2 649,188 - GFF3755 0.39 -0.1 649,188 - GFF3755 0.39 -0.0 649,188 - GFF3755 0.39 -0.6 649,188 - GFF3755 0.39 +0.9 649,583 + GFF3755 0.66 -0.5 649,584 - GFF3755 0.66 -0.1 649,584 - GFF3755 0.66 -0.5 649,664 + GFF3755 0.72 +1.7 649,766 + GFF3755 0.79 +0.4 649,766 + GFF3755 0.79 +0.2 649,767 - GFF3755 0.79 +0.2 649,925 + GFF3755 0.90 +0.2 650,085 + -0.0 650,085 + +0.5 650,085 + -0.2 650,086 - +0.5 650,086 - -0.3 650,269 - GFF3756 0.12 +0.4 650,457 + GFF3756 0.26 -0.3 650,458 - GFF3756 0.26 +0.3 650,772 + GFF3756 0.51 -0.8 650,772 + GFF3756 0.51 +0.3 650,772 + GFF3756 0.51 -0.1 650,773 - GFF3756 0.51 -0.6 650,773 - GFF3756 0.51 -0.4 650,773 - GFF3756 0.51 -0.4 650,817 + GFF3756 0.54 -0.3 650,817 + GFF3756 0.54 +0.5 650,980 - GFF3756 0.67 +0.3 650,997 + GFF3756 0.68 +0.0 650,997 + GFF3756 0.68 +0.1 650,997 + GFF3756 0.68 +0.5
Or see this region's nucleotide sequence