Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF372 and GFF373 overlap by 4 nucleotides GFF373 and GFF374 are separated by 6 nucleotides GFF374 and GFF375 overlap by 18 nucleotides GFF375 and GFF376 overlap by 7 nucleotides
GFF372 - Glutathione reductase (EC 1.8.1.7), at 35,500 to 36,900
GFF372
GFF373 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 36,897 to 37,802
GFF373
GFF374 - hypothetical protein, at 37,809 to 37,922
GFF374
GFF375 - probable iron-sulfur binding protein YPO1417, at 37,905 to 38,792
GFF375
GFF376 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 38,786 to 39,637
GFF376
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1 at 36.096 kb on - strand, within GFF372 at 36.096 kb on - strand, within GFF372 at 36.589 kb on + strand, within GFF372 at 36.590 kb on + strand, within GFF372 at 36.590 kb on + strand, within GFF372 at 36.591 kb on - strand, within GFF372 at 36.591 kb on - strand, within GFF372 at 36.707 kb on + strand, within GFF372 at 36.725 kb on + strand, within GFF372 at 37.082 kb on - strand, within GFF373 at 37.684 kb on + strand, within GFF373 at 37.811 kb on - strand at 37.847 kb on + strand, within GFF374 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.326 kb on - strand, within GFF375 at 38.326 kb on - strand, within GFF375 at 38.326 kb on - strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.569 kb on - strand, within GFF375 at 38.569 kb on - strand, within GFF375 at 38.569 kb on - strand, within GFF375 at 38.664 kb on + strand, within GFF375 at 38.664 kb on + strand, within GFF375 at 38.665 kb on - strand, within GFF375 at 38.665 kb on - strand, within GFF375 at 38.790 kb on + strand at 38.790 kb on + strand at 38.791 kb on + strand at 38.791 kb on - strand at 38.791 kb on - strand at 38.796 kb on + strand at 38.796 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 36,096 - GFF372 0.43 +0.1 36,096 - GFF372 0.43 -0.8 36,589 + GFF372 0.78 +0.8 36,590 + GFF372 0.78 +0.4 36,590 + GFF372 0.78 -0.1 36,591 - GFF372 0.78 +0.8 36,591 - GFF372 0.78 -0.6 36,707 + GFF372 0.86 +0.7 36,725 + GFF372 0.87 +0.7 37,082 - GFF373 0.20 -0.4 37,684 + GFF373 0.87 -0.4 37,811 - -0.6 37,847 + GFF374 0.33 -0.5 38,325 + GFF375 0.47 -0.2 38,325 + GFF375 0.47 -0.2 38,325 + GFF375 0.47 -0.2 38,325 + GFF375 0.47 +0.1 38,325 + GFF375 0.47 -0.1 38,326 - GFF375 0.47 -0.0 38,326 - GFF375 0.47 +0.5 38,326 - GFF375 0.47 -0.1 38,568 + GFF375 0.75 +0.0 38,568 + GFF375 0.75 -0.1 38,568 + GFF375 0.75 +0.8 38,568 + GFF375 0.75 -1.1 38,569 - GFF375 0.75 +0.2 38,569 - GFF375 0.75 -0.1 38,569 - GFF375 0.75 -1.5 38,664 + GFF375 0.85 -0.9 38,664 + GFF375 0.85 -1.5 38,665 - GFF375 0.86 +1.0 38,665 - GFF375 0.86 +0.1 38,790 + +0.2 38,790 + -0.3 38,791 + -0.0 38,791 - -0.9 38,791 - +0.0 38,796 + -0.2 38,796 + -0.1
Or see this region's nucleotide sequence