Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3717 and GFF3718 are separated by 92 nucleotides GFF3718 and GFF3719 are separated by 2 nucleotides GFF3719 and GFF3720 are separated by 73 nucleotides
GFF3717 - Salicylate hydroxylase (EC 1.14.13.1), at 610,335 to 611,474
GFF3717
GFF3718 - Transcriptional regulator, AraC family, at 611,567 to 612,556
GFF3718
GFF3719 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 612,559 to 613,326
GFF3719
GFF3720 - Metal-dependent hydrolase, at 613,400 to 614,215
GFF3720
Position (kb) 611
612
613 Strain fitness (log2 ratio) -1
0
1 at 610.720 kb on + strand, within GFF3717 at 611.183 kb on - strand, within GFF3717 at 612.339 kb on - strand, within GFF3718 at 612.488 kb on + strand at 612.489 kb on - strand at 612.656 kb on + strand, within GFF3719 at 612.656 kb on + strand, within GFF3719 at 612.656 kb on + strand, within GFF3719 at 612.656 kb on + strand, within GFF3719 at 612.774 kb on - strand, within GFF3719 at 612.902 kb on + strand, within GFF3719 at 613.100 kb on + strand, within GFF3719 at 613.100 kb on + strand, within GFF3719 at 613.167 kb on - strand, within GFF3719 at 613.370 kb on + strand at 613.502 kb on + strand, within GFF3720 at 613.503 kb on - strand, within GFF3720
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 610,720 + GFF3717 0.34 +0.5 611,183 - GFF3717 0.74 +1.1 612,339 - GFF3718 0.78 -1.3 612,488 + +0.1 612,489 - +0.6 612,656 + GFF3719 0.13 -0.6 612,656 + GFF3719 0.13 -0.1 612,656 + GFF3719 0.13 -0.1 612,656 + GFF3719 0.13 +0.7 612,774 - GFF3719 0.28 +0.2 612,902 + GFF3719 0.45 -0.2 613,100 + GFF3719 0.70 -0.5 613,100 + GFF3719 0.70 -1.3 613,167 - GFF3719 0.79 -0.6 613,370 + -0.3 613,502 + GFF3720 0.12 -0.4 613,503 - GFF3720 0.13 +0.3
Or see this region's nucleotide sequence