Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3662 and GFF3663 are separated by 68 nucleotides GFF3663 and GFF3664 overlap by 4 nucleotides GFF3664 and GFF3665 overlap by 4 nucleotides
GFF3661 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 545,357 to 546,142
GFF3661
GFF3662 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 546,126 to 547,058
GFF3662
GFF3663 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 547,127 to 549,907
GFF3663
GFF3664 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 549,904 to 550,287
GFF3664
GFF3665 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 550,284 to 552,752
GFF3665
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 546.247 kb on + strand, within GFF3662 at 546.248 kb on - strand, within GFF3662 at 546.460 kb on + strand, within GFF3662 at 546.475 kb on + strand, within GFF3662 at 546.475 kb on + strand, within GFF3662 at 546.476 kb on - strand, within GFF3662 at 546.530 kb on + strand, within GFF3662 at 546.530 kb on + strand, within GFF3662 at 546.803 kb on - strand, within GFF3662 at 546.803 kb on - strand, within GFF3662 at 546.803 kb on - strand, within GFF3662 at 547.042 kb on + strand at 547.042 kb on + strand at 547.042 kb on + strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.107 kb on + strand at 547.109 kb on + strand at 547.378 kb on - strand at 547.378 kb on - strand at 547.527 kb on + strand, within GFF3663 at 547.884 kb on + strand, within GFF3663 at 547.885 kb on - strand, within GFF3663 at 547.885 kb on - strand, within GFF3663 at 548.605 kb on - strand, within GFF3663 at 549.012 kb on + strand, within GFF3663 at 549.012 kb on + strand, within GFF3663 at 549.013 kb on - strand, within GFF3663 at 549.013 kb on - strand, within GFF3663 at 549.252 kb on + strand, within GFF3663 at 549.552 kb on + strand, within GFF3663 at 549.552 kb on + strand, within GFF3663 at 549.552 kb on + strand, within GFF3663 at 549.553 kb on - strand, within GFF3663 at 549.582 kb on + strand, within GFF3663 at 549.583 kb on - strand, within GFF3663 at 550.456 kb on + strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.481 kb on - strand at 550.501 kb on + strand at 550.624 kb on + strand, within GFF3665 at 550.624 kb on + strand, within GFF3665 at 550.625 kb on - strand, within GFF3665 at 550.711 kb on + strand, within GFF3665 at 550.711 kb on + strand, within GFF3665 at 550.712 kb on - strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.732 kb on + strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.733 kb on - strand, within GFF3665 at 550.899 kb on + strand, within GFF3665
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 546,247 + GFF3662 0.13 -0.3 546,248 - GFF3662 0.13 +1.2 546,460 + GFF3662 0.36 -1.8 546,475 + GFF3662 0.37 +0.5 546,475 + GFF3662 0.37 -1.5 546,476 - GFF3662 0.38 -0.7 546,530 + GFF3662 0.43 -0.3 546,530 + GFF3662 0.43 -0.5 546,803 - GFF3662 0.73 -0.7 546,803 - GFF3662 0.73 -0.1 546,803 - GFF3662 0.73 -0.2 547,042 + -0.7 547,042 + -0.3 547,042 + -0.3 547,043 - +1.1 547,043 - -0.5 547,043 - -1.8 547,043 - -1.2 547,107 + +0.6 547,109 + -0.0 547,378 - +0.2 547,378 - -0.0 547,527 + GFF3663 0.14 -0.1 547,884 + GFF3663 0.27 +0.5 547,885 - GFF3663 0.27 -0.0 547,885 - GFF3663 0.27 -0.8 548,605 - GFF3663 0.53 +0.5 549,012 + GFF3663 0.68 -0.1 549,012 + GFF3663 0.68 +0.4 549,013 - GFF3663 0.68 -0.0 549,013 - GFF3663 0.68 +0.4 549,252 + GFF3663 0.76 +0.7 549,552 + GFF3663 0.87 +0.2 549,552 + GFF3663 0.87 +0.9 549,552 + GFF3663 0.87 +1.0 549,553 - GFF3663 0.87 +2.2 549,582 + GFF3663 0.88 +0.2 549,583 - GFF3663 0.88 -0.5 550,456 + +0.4 550,481 - +0.1 550,481 - +0.4 550,481 - -0.0 550,481 - +0.0 550,501 + +0.5 550,624 + GFF3665 0.14 -0.2 550,624 + GFF3665 0.14 +0.5 550,625 - GFF3665 0.14 +0.7 550,711 + GFF3665 0.17 -0.4 550,711 + GFF3665 0.17 -0.2 550,712 - GFF3665 0.17 -0.0 550,732 + GFF3665 0.18 -1.0 550,732 + GFF3665 0.18 -0.2 550,732 + GFF3665 0.18 +0.0 550,732 + GFF3665 0.18 -0.1 550,732 + GFF3665 0.18 +0.1 550,733 - GFF3665 0.18 +0.3 550,733 - GFF3665 0.18 +0.6 550,733 - GFF3665 0.18 -0.0 550,733 - GFF3665 0.18 -0.3 550,899 + GFF3665 0.25 -0.1
Or see this region's nucleotide sequence