Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3261

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
142,455	+		GFF3260	0.32	-0.4
142,495	+		GFF3260	0.35	+0.1
142,567	+		GFF3260	0.40	+0.5
142,567	+		GFF3260	0.40	-0.7
142,568	-		GFF3260	0.40	+0.7
142,579	+		GFF3260	0.41	+0.3
142,580	-		GFF3260	0.41	+0.8
142,653	+		GFF3260	0.47	-0.1
142,744	+		GFF3260	0.53	+0.2
142,745	-		GFF3260	0.54	+0.2
142,745	-		GFF3260	0.54	+0.3
142,801	+		GFF3260	0.58	+0.3
142,906	+		GFF3260	0.66	-0.7
143,398	+				-0.2
143,398	+				-0.1
143,399	-				-0.1
143,542	+		GFF3261	0.15	-0.3
143,651	-		GFF3261	0.24	-0.1
143,662	+		GFF3261	0.25	+0.1
143,662	+		GFF3261	0.25	+0.2
143,875	+		GFF3261	0.43	+0.0
143,875	+		GFF3261	0.43	+0.4
143,875	+		GFF3261	0.43	-1.1
143,875	+		GFF3261	0.43	+0.5
143,875	+		GFF3261	0.43	+1.4
143,875	+		GFF3261	0.43	+0.2
143,876	-		GFF3261	0.43	-0.4
143,876	-		GFF3261	0.43	+0.1
143,876	-		GFF3261	0.43	+0.7
143,876	-		GFF3261	0.43	-0.8
143,878	+		GFF3261	0.44	+0.7
144,214	+		GFF3261	0.72	+0.9
144,214	+		GFF3261	0.72	-1.0
144,214	+		GFF3261	0.72	+0.1
144,215	-		GFF3261	0.72	+1.1
144,215	-		GFF3261	0.72	+0.0
144,215	-		GFF3261	0.72	-0.2
144,215	-		GFF3261	0.72	-0.1
144,241	+		GFF3261	0.74	-0.3
144,241	+		GFF3261	0.74	+0.2
144,271	+		GFF3261	0.77	-0.0
144,271	+		GFF3261	0.77	-0.5
144,271	+		GFF3261	0.77	+1.1
144,351	+		GFF3261	0.84	-0.3
144,352	-		GFF3261	0.84	+0.0
144,396	+		GFF3261	0.88	+0.4
144,396	+		GFF3261	0.88	+1.1
144,397	-		GFF3261	0.88	+0.1
144,487	+				-0.7
144,487	+				+0.3
144,487	+				+0.1
144,487	+				+0.4
144,487	+				-0.1
144,488	-				-0.1
144,488	-				+0.6
144,488	-				+0.7
144,488	-				-0.6
144,616	+				-0.0
144,616	+				+0.5
144,616	+				-0.1
144,616	+				-0.3
144,616	+				+0.2
144,616	+				-0.1
144,617	-				+0.2
144,715	-				+1.0
144,782	+				-1.0
144,783	-				-0.6
144,783	-				+0.2
144,790	+				-0.6
144,790	+				-0.3
144,790	+				-0.7
144,790	+				+0.1
144,790	+				+1.1
144,790	+				-1.5
144,790	+				-0.3
144,791	-				-0.8
144,791	-				+0.4
144,791	-				+0.3
144,791	-				-0.3
144,791	-				+1.5
144,791	-				-0.2
144,791	-				+0.6
144,888	+				+0.1
144,888	+				+0.1
144,888	+				-0.4
144,889	-				-0.0
144,889	-				+0.1
144,889	-				+0.5
144,889	-				-0.0
145,351	+		GFF3262	0.41	+0.4
145,351	+		GFF3262	0.41	-0.3
145,352	-		GFF3262	0.41	+0.6
145,352	-		GFF3262	0.41	-0.3
145,352	-		GFF3262	0.41	+0.4