Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3239

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
119,020	+		GFF3236	0.76	+0.1
119,336	+		GFF3237	0.51	+0.2
119,359	-		GFF3237	0.63	-0.2
119,396	+		GFF3237	0.81	+0.1
119,473	+				-0.2
119,474	-				+0.5
119,475	+				+0.3
119,499	+				-1.5
119,499	+				+0.7
119,548	-				-1.1
119,663	+		GFF3238	0.30	-0.7
119,683	+		GFF3238	0.36	-0.4
119,684	-		GFF3238	0.36	+0.1
120,005	-				+0.3
120,005	-				-0.4
120,133	+		GFF3239	0.18	-0.2
120,133	+		GFF3239	0.18	+0.2
120,217	+		GFF3239	0.27	-1.5
120,218	+		GFF3239	0.27	+0.5
120,379	+		GFF3239	0.43	+0.5
120,379	+		GFF3239	0.43	-0.7
120,380	-		GFF3239	0.43	-0.1
120,523	+		GFF3239	0.58	+0.2
120,524	-		GFF3239	0.58	+0.2
120,611	-		GFF3239	0.66	+0.3
120,701	-		GFF3239	0.76	-0.6
120,701	-		GFF3239	0.76	-0.3
120,741	+		GFF3239	0.80	-0.1
120,742	-		GFF3239	0.80	-0.2
120,742	-		GFF3239	0.80	+0.1
121,319	+				-0.2
121,319	+				+0.1
121,320	-				+0.0
121,689	-				+1.3
121,689	-				+0.2
121,799	+				+0.8
121,799	+				-0.1
121,799	+				+0.8
121,800	-				+0.4
121,800	-				+0.5
121,929	+				+0.3
121,930	-				+0.4
121,930	-				+1.7