Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3061
Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_AminoAcid20 rep C; time point 2 |
---|---|---|---|---|---|
remove | |||||
140,100 | - | GFF3060 | 0.43 | -0.4 | |
140,855 | + | GFF3060 | 0.87 | -1.2 | |
140,855 | + | GFF3060 | 0.87 | -0.3 | |
140,891 | + | GFF3060 | 0.90 | -0.8 | |
140,891 | + | GFF3060 | 0.90 | -1.2 | |
140,892 | - | GFF3060 | 0.90 | -1.2 | |
141,274 | + | GFF3061 | 0.30 | -0.1 | |
141,274 | + | GFF3061 | 0.30 | -1.3 | |
141,457 | + | GFF3061 | 0.59 | -0.3 | |
141,680 | + | -0.6 | |||
141,681 | - | -0.9 | |||
141,776 | - | -0.9 | |||
142,327 | + | GFF3062 | 0.55 | -0.2 | |
142,637 | - | GFF3062 | 0.88 | +0.2 |
Or see this region's nucleotide sequence