Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2932 and GFF2933 are separated by 103 nucleotides GFF2933 and GFF2934 are separated by 1 nucleotides GFF2934 and GFF2935 are separated by 28 nucleotides GFF2935 and GFF2936 are separated by 85 nucleotides
GFF2932 - putative membrane protein, at 15,580 to 16,533
GFF2932
GFF2933 - Transcriptional regulator, AraC family, at 16,637 to 17,326
GFF2933
GFF2934 - Lipoate synthase, at 17,328 to 18,344
GFF2934
GFF2935 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 18,373 to 19,065
GFF2935
GFF2936 - Proposed lipoate regulatory protein YbeD, at 19,151 to 19,435
GFF2936
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 16.391 kb on + strand, within GFF2932 at 16.392 kb on - strand, within GFF2932 at 16.392 kb on - strand, within GFF2932 at 16.392 kb on - strand, within GFF2932 at 16.401 kb on - strand, within GFF2932 at 16.401 kb on - strand, within GFF2932 at 16.574 kb on + strand at 16.574 kb on + strand at 16.575 kb on - strand at 16.575 kb on - strand at 16.693 kb on - strand at 17.037 kb on + strand, within GFF2933 at 17.037 kb on + strand, within GFF2933 at 17.037 kb on + strand, within GFF2933 at 17.037 kb on + strand, within GFF2933 at 17.037 kb on + strand, within GFF2933 at 17.037 kb on + strand, within GFF2933 at 17.038 kb on - strand, within GFF2933 at 17.038 kb on - strand, within GFF2933 at 17.038 kb on - strand, within GFF2933 at 17.289 kb on + strand at 17.289 kb on + strand at 17.289 kb on + strand at 17.290 kb on - strand at 19.251 kb on + strand, within GFF2936 at 19.251 kb on + strand, within GFF2936 at 19.251 kb on + strand, within GFF2936 at 19.252 kb on - strand, within GFF2936
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 16,391 + GFF2932 0.85 +0.1 16,392 - GFF2932 0.85 +0.4 16,392 - GFF2932 0.85 -0.2 16,392 - GFF2932 0.85 -0.3 16,401 - GFF2932 0.86 -0.1 16,401 - GFF2932 0.86 -0.1 16,574 + +0.1 16,574 + -0.1 16,575 - +0.6 16,575 - -0.1 16,693 - +0.6 17,037 + GFF2933 0.58 +0.0 17,037 + GFF2933 0.58 -0.3 17,037 + GFF2933 0.58 -0.2 17,037 + GFF2933 0.58 -0.0 17,037 + GFF2933 0.58 -2.0 17,037 + GFF2933 0.58 +0.8 17,038 - GFF2933 0.58 -0.4 17,038 - GFF2933 0.58 -0.2 17,038 - GFF2933 0.58 +0.4 17,289 + +0.3 17,289 + -0.5 17,289 + +0.3 17,290 - +0.4 19,251 + GFF2936 0.35 -2.8 19,251 + GFF2936 0.35 -3.1 19,251 + GFF2936 0.35 -1.7 19,252 - GFF2936 0.35 -0.9
Or see this region's nucleotide sequence