Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2924

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2922 and GFF2923 are separated by 65 nucleotidesGFF2923 and GFF2924 are separated by 73 nucleotidesGFF2924 and GFF2925 are separated by 27 nucleotidesGFF2925 and GFF2926 are separated by 27 nucleotides GFF2922 - putative c'cytochrome, at 7,638 to 8,087 GFF2922 GFF2923 - Cytochrome c-type biogenesis protein ResA, at 8,153 to 8,680 GFF2923 GFF2924 - FIG00933091: hypothetical protein, at 8,754 to 9,458 GFF2924 GFF2925 - hypothetical protein, at 9,486 to 9,917 GFF2925 GFF2926 - L-carnitine dehydratase/bile acid-inducible protein F, at 9,945 to 11,210 GFF2926 Position (kb) 8 9 10Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 8.085 kb on + strandat 8.085 kb on + strandat 8.085 kb on + strandat 8.085 kb on + strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.086 kb on - strandat 8.256 kb on + strand, within GFF2923at 8.256 kb on + strand, within GFF2923at 8.256 kb on + strand, within GFF2923at 8.257 kb on - strand, within GFF2923at 8.257 kb on - strand, within GFF2923at 8.379 kb on + strand, within GFF2923at 8.379 kb on + strand, within GFF2923at 8.380 kb on - strand, within GFF2923at 8.380 kb on - strand, within GFF2923at 8.421 kb on + strand, within GFF2923at 8.421 kb on + strand, within GFF2923at 8.421 kb on + strand, within GFF2923at 8.421 kb on + strand, within GFF2923at 8.421 kb on + strand, within GFF2923at 8.422 kb on - strand, within GFF2923at 8.431 kb on - strand, within GFF2923at 8.431 kb on - strand, within GFF2923at 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.703 kb on + strandat 8.704 kb on - strandat 8.704 kb on - strandat 8.704 kb on - strandat 8.704 kb on - strandat 8.704 kb on - strandat 8.704 kb on - strandat 8.704 kb on - strandat 9.264 kb on + strand, within GFF2924at 9.264 kb on + strand, within GFF2924at 9.264 kb on + strand, within GFF2924at 9.264 kb on + strand, within GFF2924at 9.264 kb on + strand, within GFF2924at 9.264 kb on + strand, within GFF2924at 9.264 kb on + strand, within GFF2924at 9.265 kb on - strand, within GFF2924at 9.265 kb on - strand, within GFF2924at 9.265 kb on - strand, within GFF2924at 9.265 kb on - strand, within GFF2924at 9.265 kb on - strand, within GFF2924at 9.265 kb on - strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.333 kb on + strand, within GFF2924at 9.334 kb on - strand, within GFF2924at 9.334 kb on - strand, within GFF2924at 9.334 kb on - strand, within GFF2924at 9.334 kb on - strand, within GFF2924at 9.334 kb on - strand, within GFF2924at 9.334 kb on - strand, within GFF2924at 9.363 kb on + strand, within GFF2924at 9.363 kb on + strand, within GFF2924at 9.363 kb on + strand, within GFF2924at 9.363 kb on + strand, within GFF2924at 9.363 kb on + strand, within GFF2924at 9.363 kb on + strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.364 kb on - strand, within GFF2924at 9.456 kb on + strandat 9.456 kb on + strandat 9.456 kb on + strandat 9.457 kb on - strandat 9.488 kb on - strandat 9.529 kb on + strandat 9.529 kb on + strandat 9.530 kb on - strand, within GFF2925at 9.530 kb on - strand, within GFF2925at 9.530 kb on - strand, within GFF2925at 9.538 kb on + strand, within GFF2925at 9.539 kb on - strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.754 kb on + strand, within GFF2925at 9.755 kb on - strand, within GFF2925at 9.755 kb on - strand, within GFF2925at 9.755 kb on - strand, within GFF2925at 9.755 kb on - strand, within GFF2925at 9.755 kb on - strand, within GFF2925at 9.755 kb on - strand, within GFF2925at 9.778 kb on + strand, within GFF2925at 9.779 kb on - strand, within GFF2925at 9.779 kb on - strand, within GFF2925at 9.779 kb on - strand, within GFF2925at 9.917 kb on + strandat 9.917 kb on + strandat 9.917 kb on + strandat 9.917 kb on - strandat 9.918 kb on - strandat 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.405 kb on + strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.406 kb on - strand, within GFF2926at 10.450 kb on + strand, within GFF2926

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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8,085 + -0.0
8,085 + -0.2
8,085 + +0.4
8,085 + +0.5
8,086 - -0.1
8,086 - -1.6
8,086 - +0.8
8,086 - +1.2
8,086 - -1.3
8,086 - +0.3
8,086 - +0.3
8,086 - +0.1
8,256 + GFF2923 0.20 -2.1
8,256 + GFF2923 0.20 -2.0
8,256 + GFF2923 0.20 -0.8
8,257 - GFF2923 0.20 -2.8
8,257 - GFF2923 0.20 -2.7
8,379 + GFF2923 0.43 -2.1
8,379 + GFF2923 0.43 -3.3
8,380 - GFF2923 0.43 -3.3
8,380 - GFF2923 0.43 -1.9
8,421 + GFF2923 0.51 -0.8
8,421 + GFF2923 0.51 -3.9
8,421 + GFF2923 0.51 -2.3
8,421 + GFF2923 0.51 -2.8
8,421 + GFF2923 0.51 -3.7
8,422 - GFF2923 0.51 -3.7
8,431 - GFF2923 0.53 -1.4
8,431 - GFF2923 0.53 -0.2
8,703 + -0.4
8,703 + +0.5
8,703 + -1.5
8,703 + +0.2
8,703 + -0.1
8,703 + +0.2
8,703 + +0.1
8,703 + -2.2
8,703 + +0.2
8,703 + +0.1
8,703 + +0.3
8,703 + +0.9
8,703 + +0.2
8,703 + +0.0
8,704 - +0.9
8,704 - +0.6
8,704 - +0.9
8,704 - -0.2
8,704 - +0.2
8,704 - -0.2
8,704 - +1.1
9,264 + GFF2924 0.72 +0.2
9,264 + GFF2924 0.72 -0.7
9,264 + GFF2924 0.72 +0.0
9,264 + GFF2924 0.72 -0.1
9,264 + GFF2924 0.72 +0.8
9,264 + GFF2924 0.72 +0.6
9,264 + GFF2924 0.72 -0.0
9,265 - GFF2924 0.72 +0.0
9,265 - GFF2924 0.72 +1.7
9,265 - GFF2924 0.72 +0.1
9,265 - GFF2924 0.72 +0.5
9,265 - GFF2924 0.72 -2.4
9,265 - GFF2924 0.72 +0.9
9,333 + GFF2924 0.82 -0.0
9,333 + GFF2924 0.82 +0.7
9,333 + GFF2924 0.82 +0.4
9,333 + GFF2924 0.82 -1.7
9,333 + GFF2924 0.82 +0.0
9,333 + GFF2924 0.82 -0.3
9,333 + GFF2924 0.82 -0.5
9,334 - GFF2924 0.82 -1.3
9,334 - GFF2924 0.82 -0.3
9,334 - GFF2924 0.82 +0.0
9,334 - GFF2924 0.82 +1.2
9,334 - GFF2924 0.82 +1.4
9,334 - GFF2924 0.82 +0.6
9,363 + GFF2924 0.86 -0.3
9,363 + GFF2924 0.86 -0.5
9,363 + GFF2924 0.86 -0.0
9,363 + GFF2924 0.86 +0.7
9,363 + GFF2924 0.86 -0.4
9,363 + GFF2924 0.86 +0.3
9,364 - GFF2924 0.87 -0.1
9,364 - GFF2924 0.87 -0.2
9,364 - GFF2924 0.87 +0.1
9,364 - GFF2924 0.87 -0.4
9,364 - GFF2924 0.87 -0.2
9,364 - GFF2924 0.87 +0.4
9,364 - GFF2924 0.87 -0.6
9,364 - GFF2924 0.87 -0.5
9,364 - GFF2924 0.87 -0.9
9,456 + -0.0
9,456 + -0.2
9,456 + -0.2
9,457 - +1.2
9,488 - -0.3
9,529 + +0.3
9,529 + -0.6
9,530 - GFF2925 0.10 -0.6
9,530 - GFF2925 0.10 +0.3
9,530 - GFF2925 0.10 +0.6
9,538 + GFF2925 0.12 +0.8
9,539 - GFF2925 0.12 +0.1
9,754 + GFF2925 0.62 -1.0
9,754 + GFF2925 0.62 +0.2
9,754 + GFF2925 0.62 +0.1
9,754 + GFF2925 0.62 -0.5
9,754 + GFF2925 0.62 -0.1
9,754 + GFF2925 0.62 +0.1
9,754 + GFF2925 0.62 +0.2
9,754 + GFF2925 0.62 -0.1
9,754 + GFF2925 0.62 +0.9
9,754 + GFF2925 0.62 -0.1
9,754 + GFF2925 0.62 +0.4
9,755 - GFF2925 0.62 +0.3
9,755 - GFF2925 0.62 +0.3
9,755 - GFF2925 0.62 -0.2
9,755 - GFF2925 0.62 -0.0
9,755 - GFF2925 0.62 +0.1
9,755 - GFF2925 0.62 -0.6
9,778 + GFF2925 0.68 +0.0
9,779 - GFF2925 0.68 +0.0
9,779 - GFF2925 0.68 -0.0
9,779 - GFF2925 0.68 +0.2
9,917 + +0.2
9,917 + +0.0
9,917 + +0.3
9,917 - +1.1
9,918 - +0.2
10,405 + GFF2926 0.36 +0.3
10,405 + GFF2926 0.36 +0.2
10,405 + GFF2926 0.36 +0.2
10,405 + GFF2926 0.36 +0.1
10,405 + GFF2926 0.36 +0.1
10,405 + GFF2926 0.36 -0.0
10,405 + GFF2926 0.36 +0.8
10,405 + GFF2926 0.36 -0.6
10,405 + GFF2926 0.36 -0.2
10,405 + GFF2926 0.36 -0.0
10,405 + GFF2926 0.36 +1.0
10,405 + GFF2926 0.36 +0.1
10,405 + GFF2926 0.36 -1.9
10,405 + GFF2926 0.36 +0.2
10,406 - GFF2926 0.36 -0.4
10,406 - GFF2926 0.36 -2.5
10,406 - GFF2926 0.36 -0.3
10,406 - GFF2926 0.36 +0.8
10,406 - GFF2926 0.36 +0.5
10,406 - GFF2926 0.36 +0.2
10,406 - GFF2926 0.36 +0.5
10,406 - GFF2926 0.36 -0.1
10,406 - GFF2926 0.36 -0.5
10,406 - GFF2926 0.36 -0.1
10,406 - GFF2926 0.36 -1.2
10,406 - GFF2926 0.36 -0.5
10,406 - GFF2926 0.36 +0.0
10,450 + GFF2926 0.40 -0.1

Or see this region's nucleotide sequence