Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2592 and GFF2593 are separated by 180 nucleotides GFF2593 and GFF2594 are separated by 5 nucleotides GFF2594 and GFF2595 overlap by 4 nucleotides GFF2595 and GFF2596 overlap by 30 nucleotides GFF2596 and GFF2597 are separated by 79 nucleotides
GFF2592 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 186,054 to 186,629
GFF2592
GFF2593 - hypothetical protein, at 186,810 to 187,262
GFF2593
GFF2594 - Adenylate cyclase (EC 4.6.1.1), at 187,268 to 188,623
GFF2594
GFF2595 - hypothetical protein, at 188,620 to 189,363
GFF2595
GFF2596 - hypothetical protein, at 189,334 to 189,453
GFF2596
GFF2597 - Hypothetical protein YaeJ with similarity to translation release factor, at 189,533 to 189,937
GFF2597
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.331 kb on + strand, within GFF2592 at 186.331 kb on + strand, within GFF2592 at 186.332 kb on - strand, within GFF2592 at 186.924 kb on + strand, within GFF2593 at 186.924 kb on + strand, within GFF2593 at 186.924 kb on + strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 186.925 kb on - strand, within GFF2593 at 187.089 kb on + strand, within GFF2593 at 187.090 kb on - strand, within GFF2593 at 187.358 kb on + strand at 187.358 kb on + strand at 187.358 kb on + strand at 187.359 kb on + strand at 187.359 kb on - strand at 187.359 kb on - strand at 187.359 kb on - strand at 187.374 kb on - strand at 187.376 kb on + strand at 187.377 kb on - strand at 187.377 kb on - strand at 187.493 kb on + strand, within GFF2594 at 187.493 kb on + strand, within GFF2594 at 187.494 kb on - strand, within GFF2594 at 187.512 kb on - strand, within GFF2594 at 187.854 kb on - strand, within GFF2594 at 187.854 kb on - strand, within GFF2594 at 187.874 kb on + strand, within GFF2594 at 187.979 kb on + strand, within GFF2594 at 187.979 kb on + strand, within GFF2594 at 187.980 kb on - strand, within GFF2594 at 187.985 kb on + strand, within GFF2594 at 188.319 kb on - strand, within GFF2594 at 188.354 kb on + strand, within GFF2594 at 188.354 kb on + strand, within GFF2594 at 188.354 kb on + strand, within GFF2594 at 188.355 kb on - strand, within GFF2594 at 188.355 kb on - strand, within GFF2594 at 188.355 kb on - strand, within GFF2594 at 188.972 kb on + strand, within GFF2595 at 188.972 kb on + strand, within GFF2595 at 188.972 kb on + strand, within GFF2595 at 189.290 kb on + strand at 189.291 kb on - strand at 189.291 kb on - strand at 189.451 kb on + strand at 189.482 kb on - strand at 189.488 kb on + strand at 189.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 186,331 + GFF2592 0.48 -0.4 186,331 + GFF2592 0.48 -0.1 186,332 - GFF2592 0.48 -0.7 186,924 + GFF2593 0.25 +0.9 186,924 + GFF2593 0.25 +0.1 186,924 + GFF2593 0.25 +0.1 186,925 - GFF2593 0.25 -0.4 186,925 - GFF2593 0.25 +1.5 186,925 - GFF2593 0.25 -0.2 186,925 - GFF2593 0.25 -0.1 187,089 + GFF2593 0.62 +0.2 187,090 - GFF2593 0.62 +0.9 187,358 + +0.5 187,358 + +0.4 187,358 + -0.3 187,359 + +0.4 187,359 - +0.5 187,359 - +0.7 187,359 - -0.0 187,374 - +1.2 187,376 + +0.2 187,377 - +0.9 187,377 - -2.3 187,493 + GFF2594 0.17 +0.1 187,493 + GFF2594 0.17 +0.0 187,494 - GFF2594 0.17 +0.4 187,512 - GFF2594 0.18 +1.9 187,854 - GFF2594 0.43 +0.3 187,854 - GFF2594 0.43 +0.5 187,874 + GFF2594 0.45 -1.9 187,979 + GFF2594 0.52 +0.1 187,979 + GFF2594 0.52 -0.1 187,980 - GFF2594 0.53 -0.8 187,985 + GFF2594 0.53 -0.4 188,319 - GFF2594 0.78 -2.2 188,354 + GFF2594 0.80 +1.1 188,354 + GFF2594 0.80 -0.3 188,354 + GFF2594 0.80 +1.1 188,355 - GFF2594 0.80 -1.1 188,355 - GFF2594 0.80 +0.0 188,355 - GFF2594 0.80 +1.6 188,972 + GFF2595 0.47 +0.8 188,972 + GFF2595 0.47 +0.2 188,972 + GFF2595 0.47 +1.0 189,290 + -0.0 189,291 - +0.0 189,291 - +0.5 189,451 + -0.0 189,482 - +0.7 189,488 + +0.9 189,510 + -0.5
Or see this region's nucleotide sequence