Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF191 and GFF192 are separated by 191 nucleotides GFF192 and GFF193 are separated by 41 nucleotides
GFF191 - Transcriptional regulator ligR, LysR family, at 204,659 to 205,576
GFF191
GFF192 - Outer membrane protein (porin), at 205,768 to 206,730
GFF192
GFF193 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 206,772 to 207,698
GFF193
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1 at 204.944 kb on + strand, within GFF191 at 204.945 kb on - strand, within GFF191 at 205.089 kb on - strand, within GFF191 at 205.089 kb on - strand, within GFF191 at 205.640 kb on + strand at 205.640 kb on + strand at 205.681 kb on + strand at 205.682 kb on - strand at 206.162 kb on - strand, within GFF192 at 206.227 kb on + strand, within GFF192 at 206.228 kb on - strand, within GFF192 at 206.329 kb on + strand, within GFF192 at 206.365 kb on + strand, within GFF192 at 206.426 kb on - strand, within GFF192 at 206.426 kb on - strand, within GFF192 at 206.543 kb on - strand, within GFF192 at 206.552 kb on - strand, within GFF192 at 206.611 kb on + strand, within GFF192 at 206.611 kb on + strand, within GFF192 at 206.612 kb on - strand, within GFF192 at 206.635 kb on + strand at 206.802 kb on + strand at 206.803 kb on - strand at 206.803 kb on - strand at 206.895 kb on + strand, within GFF193 at 206.980 kb on - strand, within GFF193 at 207.318 kb on + strand, within GFF193
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 204,944 + GFF191 0.31 -0.9 204,945 - GFF191 0.31 +0.3 205,089 - GFF191 0.47 +0.1 205,089 - GFF191 0.47 +0.3 205,640 + +0.1 205,640 + -0.4 205,681 + -0.1 205,682 - +0.4 206,162 - GFF192 0.41 +0.3 206,227 + GFF192 0.48 +0.1 206,228 - GFF192 0.48 -0.2 206,329 + GFF192 0.58 +0.0 206,365 + GFF192 0.62 +0.9 206,426 - GFF192 0.68 -0.2 206,426 - GFF192 0.68 -0.4 206,543 - GFF192 0.80 +0.1 206,552 - GFF192 0.81 +0.5 206,611 + GFF192 0.88 +1.3 206,611 + GFF192 0.88 +0.2 206,612 - GFF192 0.88 +0.5 206,635 + -1.8 206,802 + -1.1 206,803 - -1.0 206,803 - -0.7 206,895 + GFF193 0.13 +0.1 206,980 - GFF193 0.22 +0.3 207,318 + GFF193 0.59 +0.1
Or see this region's nucleotide sequence