Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1776

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
640,750	-		GFF1775	0.37	-0.3
640,781	+		GFF1775	0.40	+0.9
640,781	+		GFF1775	0.40	-0.9
640,781	+		GFF1775	0.40	-0.1
641,104	+		GFF1775	0.75	+0.3
641,104	+		GFF1775	0.75	-0.2
641,105	-		GFF1775	0.75	-0.3
641,105	-		GFF1775	0.75	-0.5
641,105	-		GFF1775	0.75	-0.2
641,125	+		GFF1775	0.77	-0.3
641,795	+		GFF1777	0.27	+0.0
641,796	-		GFF1777	0.27	+0.1
642,290	+		GFF1777	0.79	+0.5
642,290	+		GFF1777	0.79	-0.2
642,290	+		GFF1777	0.79	+1.5
642,290	+		GFF1777	0.79	+0.5
642,291	-		GFF1777	0.79	-0.5
642,291	-		GFF1777	0.79	-0.4
642,291	-		GFF1777	0.79	-0.3
642,351	-		GFF1777	0.85	-1.4
642,351	-		GFF1777	0.85	-0.4
642,354	-		GFF1777	0.85	-0.0
642,440	+				+0.1
642,440	+				+0.1
642,441	-				+0.4
642,441	-				-0.4