Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1730

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1728 and GFF1729 are separated by 42 nucleotidesGFF1729 and GFF1730 are separated by 0 nucleotidesGFF1730 and GFF1731 are separated by 60 nucleotidesGFF1731 and GFF1732 are separated by 90 nucleotides GFF1728 - Transcriptional regulator, TetR family, at 584,376 to 584,972 GFF1728 GFF1729 - Glyoxalase/Bleomycin resistance protein/dioxygenase domain, at 585,015 to 585,470 GFF1729 GFF1730 - Mll3930 protein, at 585,471 to 585,836 GFF1730 GFF1731 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 585,897 to 586,304 GFF1731 GFF1732 - Putative predicted metal-dependent hydrolase, at 586,395 to 587,288 GFF1732 Position (kb) 585 586Strain fitness (log2 ratio) -2 -1 0 1at 584.668 kb on + strand, within GFF1728at 584.668 kb on + strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 584.807 kb on - strand, within GFF1728at 585.009 kb on + strandat 585.032 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.057 kb on + strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.058 kb on - strandat 585.060 kb on + strandat 585.105 kb on + strand, within GFF1729at 585.106 kb on - strand, within GFF1729at 585.106 kb on - strand, within GFF1729at 585.106 kb on - strand, within GFF1729at 585.106 kb on - strand, within GFF1729at 585.150 kb on + strand, within GFF1729at 585.150 kb on + strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.151 kb on - strand, within GFF1729at 585.295 kb on - strand, within GFF1729at 585.295 kb on - strand, within GFF1729at 585.565 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.784 kb on + strand, within GFF1730at 585.784 kb on + strand, within GFF1730at 585.784 kb on + strand, within GFF1730at 585.785 kb on - strand, within GFF1730at 585.886 kb on + strandat 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.168 kb on + strand, within GFF1731at 586.168 kb on + strand, within GFF1731at 586.168 kb on + strand, within GFF1731at 586.169 kb on - strand, within GFF1731at 586.169 kb on - strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.285 kb on + strandat 586.285 kb on + strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.320 kb on + strandat 586.320 kb on + strandat 586.321 kb on - strandat 586.321 kb on - strandat 586.321 kb on - strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.331 kb on - strandat 586.331 kb on - strandat 586.331 kb on - strandat 586.534 kb on + strand, within GFF1732at 586.534 kb on + strand, within GFF1732at 586.534 kb on + strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.645 kb on + strand, within GFF1732at 586.645 kb on + strand, within GFF1732at 586.646 kb on - strand, within GFF1732

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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584,668 + GFF1728 0.49 -0.1
584,668 + GFF1728 0.49 -0.4
584,807 - GFF1728 0.72 -0.8
584,807 - GFF1728 0.72 -0.1
584,807 - GFF1728 0.72 -1.0
584,807 - GFF1728 0.72 -0.1
584,807 - GFF1728 0.72 -0.7
584,807 - GFF1728 0.72 -0.5
584,807 - GFF1728 0.72 +0.2
584,807 - GFF1728 0.72 +0.0
585,009 + -0.4
585,032 + -0.3
585,057 + -0.8
585,057 + -0.3
585,057 + -0.0
585,057 + -0.2
585,057 + -0.3
585,057 + -0.1
585,057 + +0.4
585,057 + -0.4
585,057 + -0.3
585,058 - -0.1
585,058 - -0.0
585,058 - -0.0
585,058 - -0.1
585,058 - -0.1
585,058 - -0.5
585,058 - -0.2
585,058 - +0.1
585,060 + -0.2
585,105 + GFF1729 0.20 -0.4
585,106 - GFF1729 0.20 +0.2
585,106 - GFF1729 0.20 +0.1
585,106 - GFF1729 0.20 +0.1
585,106 - GFF1729 0.20 -1.4
585,150 + GFF1729 0.30 -0.3
585,150 + GFF1729 0.30 -0.6
585,151 - GFF1729 0.30 -0.2
585,151 - GFF1729 0.30 +1.2
585,151 - GFF1729 0.30 -0.2
585,151 - GFF1729 0.30 +0.9
585,151 - GFF1729 0.30 -0.5
585,151 - GFF1729 0.30 +0.8
585,151 - GFF1729 0.30 +0.9
585,151 - GFF1729 0.30 +0.5
585,295 - GFF1729 0.61 -0.1
585,295 - GFF1729 0.61 -2.4
585,565 + GFF1730 0.26 +0.0
585,670 + GFF1730 0.54 -0.3
585,670 + GFF1730 0.54 -0.1
585,670 + GFF1730 0.54 +0.4
585,670 + GFF1730 0.54 -1.3
585,670 + GFF1730 0.54 -0.5
585,670 + GFF1730 0.54 -0.3
585,670 + GFF1730 0.54 +0.2
585,670 + GFF1730 0.54 +0.2
585,671 - GFF1730 0.55 +0.2
585,671 - GFF1730 0.55 +1.1
585,671 - GFF1730 0.55 +0.2
585,671 - GFF1730 0.55 +0.0
585,671 - GFF1730 0.55 -0.1
585,671 - GFF1730 0.55 +0.3
585,671 - GFF1730 0.55 -0.7
585,671 - GFF1730 0.55 +0.5
585,671 - GFF1730 0.55 +0.3
585,671 - GFF1730 0.55 +0.3
585,671 - GFF1730 0.55 -0.6
585,671 - GFF1730 0.55 -0.4
585,784 + GFF1730 0.86 +0.5
585,784 + GFF1730 0.86 -0.3
585,784 + GFF1730 0.86 -1.2
585,785 - GFF1730 0.86 +0.7
585,886 + -0.6
586,075 + GFF1731 0.44 +0.9
586,075 + GFF1731 0.44 -0.1
586,075 + GFF1731 0.44 -1.0
586,075 + GFF1731 0.44 -0.2
586,075 + GFF1731 0.44 +0.4
586,075 + GFF1731 0.44 -0.4
586,075 + GFF1731 0.44 -0.5
586,076 - GFF1731 0.44 -0.2
586,076 - GFF1731 0.44 -1.3
586,076 - GFF1731 0.44 -0.9
586,076 - GFF1731 0.44 -0.4
586,076 - GFF1731 0.44 +0.2
586,076 - GFF1731 0.44 -0.2
586,076 - GFF1731 0.44 -0.1
586,076 - GFF1731 0.44 -0.5
586,076 - GFF1731 0.44 -0.7
586,076 - GFF1731 0.44 +0.4
586,076 - GFF1731 0.44 -1.1
586,076 - GFF1731 0.44 -0.1
586,076 - GFF1731 0.44 -0.2
586,168 + GFF1731 0.66 +0.6
586,168 + GFF1731 0.66 -0.9
586,168 + GFF1731 0.66 -0.7
586,169 - GFF1731 0.67 -0.3
586,169 - GFF1731 0.67 -0.1
586,228 + GFF1731 0.81 +0.5
586,228 + GFF1731 0.81 +0.6
586,228 + GFF1731 0.81 -0.8
586,228 + GFF1731 0.81 -0.6
586,228 + GFF1731 0.81 -0.2
586,229 - GFF1731 0.81 -0.0
586,229 - GFF1731 0.81 +0.3
586,229 - GFF1731 0.81 -0.3
586,229 - GFF1731 0.81 +0.7
586,285 + +0.8
586,285 + +0.3
586,286 - -0.7
586,286 - +0.2
586,286 - +0.0
586,286 - +0.2
586,286 - -0.3
586,286 - +0.1
586,286 - -1.2
586,320 + +0.8
586,320 + -0.3
586,321 - +0.1
586,321 - -1.5
586,321 - -0.0
586,330 + +0.4
586,330 + -0.3
586,330 + -0.2
586,330 + +0.9
586,330 + +0.3
586,330 + -1.0
586,330 + -0.4
586,331 - +0.1
586,331 - -0.1
586,331 - -0.4
586,534 + GFF1732 0.16 -0.8
586,534 + GFF1732 0.16 -0.2
586,534 + GFF1732 0.16 -1.1
586,535 - GFF1732 0.16 -0.1
586,535 - GFF1732 0.16 +0.2
586,535 - GFF1732 0.16 -0.1
586,535 - GFF1732 0.16 +0.1
586,645 + GFF1732 0.28 +0.1
586,645 + GFF1732 0.28 +1.1
586,646 - GFF1732 0.28 -0.4

Or see this region's nucleotide sequence