Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1624

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1623 and GFF1624 overlap by 1 nucleotidesGFF1624 and GFF1625 are separated by 67 nucleotidesGFF1625 and GFF1626 overlap by 10 nucleotides GFF1623 - Glucoamylase (EC 3.2.1.3), at 477,355 to 479,169 GFF1623 GFF1624 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 479,169 to 480,551 GFF1624 GFF1625 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 480,619 to 481,524 GFF1625 GFF1626 - Glucokinase (EC 2.7.1.2), at 481,515 to 482,528 GFF1626 Position (kb) 479 480 481Strain fitness (log2 ratio) -2 -1 0 1 2at 478.243 kb on + strand, within GFF1623at 478.243 kb on + strand, within GFF1623at 478.243 kb on + strand, within GFF1623at 478.244 kb on - strand, within GFF1623at 478.244 kb on - strand, within GFF1623at 478.244 kb on - strand, within GFF1623at 478.244 kb on - strand, within GFF1623at 478.424 kb on - strand, within GFF1623at 478.424 kb on - strand, within GFF1623at 478.540 kb on + strand, within GFF1623at 478.541 kb on - strand, within GFF1623at 478.541 kb on - strand, within GFF1623at 478.541 kb on - strand, within GFF1623at 478.678 kb on + strand, within GFF1623at 479.105 kb on - strandat 479.400 kb on + strand, within GFF1624at 479.400 kb on + strand, within GFF1624at 479.400 kb on + strand, within GFF1624at 479.400 kb on + strand, within GFF1624at 479.400 kb on + strand, within GFF1624at 479.401 kb on - strand, within GFF1624at 479.403 kb on + strand, within GFF1624at 479.403 kb on + strand, within GFF1624at 479.403 kb on + strand, within GFF1624at 479.404 kb on - strand, within GFF1624at 479.478 kb on + strand, within GFF1624at 479.478 kb on + strand, within GFF1624at 479.568 kb on + strand, within GFF1624at 479.569 kb on - strand, within GFF1624at 479.763 kb on + strand, within GFF1624at 479.764 kb on - strand, within GFF1624at 479.931 kb on + strand, within GFF1624at 479.931 kb on + strand, within GFF1624at 479.973 kb on + strand, within GFF1624at 479.974 kb on - strand, within GFF1624at 479.974 kb on - strand, within GFF1624at 480.180 kb on + strand, within GFF1624at 480.181 kb on - strand, within GFF1624at 480.328 kb on + strand, within GFF1624at 480.328 kb on + strand, within GFF1624at 480.329 kb on - strand, within GFF1624at 480.329 kb on - strand, within GFF1624at 480.387 kb on + strand, within GFF1624at 480.550 kb on - strandat 480.550 kb on - strandat 480.550 kb on - strandat 480.607 kb on + strandat 480.607 kb on + strandat 480.607 kb on + strandat 480.607 kb on + strandat 480.631 kb on + strandat 480.631 kb on + strandat 480.631 kb on + strandat 480.875 kb on + strand, within GFF1625at 480.875 kb on + strand, within GFF1625at 480.875 kb on + strand, within GFF1625at 480.875 kb on + strand, within GFF1625at 480.876 kb on - strand, within GFF1625at 480.876 kb on - strand, within GFF1625at 480.876 kb on - strand, within GFF1625at 480.977 kb on - strand, within GFF1625at 481.013 kb on + strand, within GFF1625at 481.013 kb on + strand, within GFF1625at 481.013 kb on + strand, within GFF1625at 481.014 kb on - strand, within GFF1625at 481.014 kb on - strand, within GFF1625at 481.088 kb on + strand, within GFF1625at 481.096 kb on + strand, within GFF1625at 481.096 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.114 kb on + strand, within GFF1625at 481.115 kb on - strand, within GFF1625at 481.115 kb on - strand, within GFF1625at 481.115 kb on - strand, within GFF1625at 481.115 kb on - strand, within GFF1625at 481.115 kb on - strand, within GFF1625at 481.122 kb on + strand, within GFF1625at 481.123 kb on - strand, within GFF1625at 481.195 kb on + strand, within GFF1625at 481.390 kb on + strand, within GFF1625at 481.391 kb on - strand, within GFF1625at 481.391 kb on - strand, within GFF1625at 481.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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478,243 + GFF1623 0.49 +0.7
478,243 + GFF1623 0.49 +0.4
478,243 + GFF1623 0.49 -0.5
478,244 - GFF1623 0.49 +0.1
478,244 - GFF1623 0.49 +0.6
478,244 - GFF1623 0.49 -0.0
478,244 - GFF1623 0.49 +0.2
478,424 - GFF1623 0.59 +0.4
478,424 - GFF1623 0.59 -0.1
478,540 + GFF1623 0.65 +0.3
478,541 - GFF1623 0.65 -1.2
478,541 - GFF1623 0.65 +0.0
478,541 - GFF1623 0.65 +0.3
478,678 + GFF1623 0.73 +0.5
479,105 - -0.2
479,400 + GFF1624 0.17 +0.6
479,400 + GFF1624 0.17 +0.1
479,400 + GFF1624 0.17 +0.5
479,400 + GFF1624 0.17 -0.3
479,400 + GFF1624 0.17 -0.4
479,401 - GFF1624 0.17 +0.3
479,403 + GFF1624 0.17 -0.2
479,403 + GFF1624 0.17 +0.5
479,403 + GFF1624 0.17 -0.4
479,404 - GFF1624 0.17 -1.2
479,478 + GFF1624 0.22 +0.2
479,478 + GFF1624 0.22 +1.1
479,568 + GFF1624 0.29 -1.1
479,569 - GFF1624 0.29 +0.2
479,763 + GFF1624 0.43 -1.1
479,764 - GFF1624 0.43 -0.1
479,931 + GFF1624 0.55 -0.3
479,931 + GFF1624 0.55 +0.2
479,973 + GFF1624 0.58 +2.1
479,974 - GFF1624 0.58 -0.5
479,974 - GFF1624 0.58 -0.6
480,180 + GFF1624 0.73 -0.2
480,181 - GFF1624 0.73 -0.5
480,328 + GFF1624 0.84 -0.3
480,328 + GFF1624 0.84 +0.1
480,329 - GFF1624 0.84 -1.1
480,329 - GFF1624 0.84 -2.0
480,387 + GFF1624 0.88 +0.1
480,550 - +0.8
480,550 - +0.0
480,550 - +0.3
480,607 + +0.2
480,607 + -0.3
480,607 + +0.5
480,607 + -0.7
480,631 + -0.4
480,631 + +0.5
480,631 + +0.1
480,875 + GFF1625 0.28 +0.7
480,875 + GFF1625 0.28 +1.0
480,875 + GFF1625 0.28 +0.5
480,875 + GFF1625 0.28 -0.0
480,876 - GFF1625 0.28 -0.0
480,876 - GFF1625 0.28 -0.2
480,876 - GFF1625 0.28 +0.3
480,977 - GFF1625 0.40 -0.1
481,013 + GFF1625 0.43 +0.0
481,013 + GFF1625 0.43 -0.7
481,013 + GFF1625 0.43 -0.4
481,014 - GFF1625 0.44 +0.5
481,014 - GFF1625 0.44 -1.0
481,088 + GFF1625 0.52 +0.4
481,096 + GFF1625 0.53 -0.4
481,096 + GFF1625 0.53 +0.1
481,114 + GFF1625 0.55 -0.5
481,114 + GFF1625 0.55 -0.4
481,114 + GFF1625 0.55 +0.1
481,114 + GFF1625 0.55 +0.1
481,114 + GFF1625 0.55 +0.7
481,114 + GFF1625 0.55 -0.0
481,114 + GFF1625 0.55 +0.2
481,115 - GFF1625 0.55 -0.2
481,115 - GFF1625 0.55 -0.2
481,115 - GFF1625 0.55 -1.3
481,115 - GFF1625 0.55 -0.8
481,115 - GFF1625 0.55 -0.7
481,122 + GFF1625 0.56 -0.1
481,123 - GFF1625 0.56 -0.3
481,195 + GFF1625 0.64 -0.0
481,390 + GFF1625 0.85 -0.3
481,391 - GFF1625 0.85 -0.6
481,391 - GFF1625 0.85 +0.8
481,459 + +0.6

Or see this region's nucleotide sequence