Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF157 and GFF158 are separated by 7 nucleotides GFF158 and GFF159 overlap by 1 nucleotides GFF159 and GFF160 are separated by 41 nucleotides
GFF157 - Radical SAM domain protein, at 170,629 to 171,723
GFF157
GFF158 - NAD synthetase (EC 6.3.1.5), at 171,731 to 172,702
GFF158
GFF159 - Acyl carrier protein, at 172,702 to 172,956
GFF159
GFF160 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 172,998 to 174,515
GFF160
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.900 kb on - strand, within GFF157 at 170.900 kb on - strand, within GFF157 at 170.900 kb on - strand, within GFF157 at 170.905 kb on + strand, within GFF157 at 170.927 kb on - strand, within GFF157 at 170.927 kb on - strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.065 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.431 kb on - strand, within GFF157 at 171.431 kb on - strand, within GFF157 at 171.553 kb on + strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.801 kb on - strand at 171.904 kb on - strand, within GFF158 at 171.918 kb on + strand, within GFF158 at 171.919 kb on - strand, within GFF158 at 171.948 kb on + strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 171.949 kb on - strand, within GFF158 at 172.030 kb on - strand, within GFF158 at 172.030 kb on - strand, within GFF158 at 172.096 kb on - strand, within GFF158 at 172.128 kb on + strand, within GFF158 at 172.128 kb on + strand, within GFF158 at 172.128 kb on + strand, within GFF158 at 172.150 kb on - strand, within GFF158 at 172.152 kb on + strand, within GFF158 at 172.152 kb on + strand, within GFF158 at 172.152 kb on + strand, within GFF158 at 172.210 kb on - strand, within GFF158 at 172.330 kb on - strand, within GFF158 at 172.335 kb on + strand, within GFF158 at 172.335 kb on + strand, within GFF158 at 172.378 kb on - strand, within GFF158 at 173.309 kb on - strand, within GFF160 at 173.420 kb on - strand, within GFF160 at 173.602 kb on + strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.603 kb on - strand, within GFF160 at 173.603 kb on - strand, within GFF160
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 170,900 - GFF157 0.25 -0.7 170,900 - GFF157 0.25 -0.8 170,900 - GFF157 0.25 +0.1 170,905 + GFF157 0.25 +0.3 170,927 - GFF157 0.27 -0.4 170,927 - GFF157 0.27 -1.1 171,064 + GFF157 0.40 -0.5 171,064 + GFF157 0.40 +0.9 171,064 + GFF157 0.40 -0.6 171,065 - GFF157 0.40 -0.0 171,221 - GFF157 0.54 +0.1 171,221 - GFF157 0.54 -0.5 171,221 - GFF157 0.54 -0.2 171,430 + GFF157 0.73 +0.5 171,430 + GFF157 0.73 -2.6 171,430 + GFF157 0.73 +0.1 171,431 - GFF157 0.73 -0.3 171,431 - GFF157 0.73 -0.4 171,553 + GFF157 0.84 -0.6 171,554 - GFF157 0.84 +0.5 171,554 - GFF157 0.84 -1.1 171,554 - GFF157 0.84 -0.4 171,801 - -0.8 171,904 - GFF158 0.18 +0.2 171,918 + GFF158 0.19 -0.6 171,919 - GFF158 0.19 +0.7 171,948 + GFF158 0.22 -0.4 171,949 - GFF158 0.22 -0.0 171,949 - GFF158 0.22 +0.4 171,949 - GFF158 0.22 +0.5 171,949 - GFF158 0.22 +0.0 172,030 - GFF158 0.31 -0.5 172,030 - GFF158 0.31 +0.0 172,096 - GFF158 0.38 +0.7 172,128 + GFF158 0.41 -0.5 172,128 + GFF158 0.41 +1.0 172,128 + GFF158 0.41 -0.2 172,150 - GFF158 0.43 -0.5 172,152 + GFF158 0.43 +1.0 172,152 + GFF158 0.43 +0.7 172,152 + GFF158 0.43 -0.2 172,210 - GFF158 0.49 -0.2 172,330 - GFF158 0.62 -0.3 172,335 + GFF158 0.62 +0.1 172,335 + GFF158 0.62 +0.1 172,378 - GFF158 0.67 +0.1 173,309 - GFF160 0.20 -0.5 173,420 - GFF160 0.28 -0.4 173,602 + GFF160 0.40 -0.0 173,603 - GFF160 0.40 -0.7 173,603 - GFF160 0.40 +0.1 173,603 - GFF160 0.40 +0.4 173,603 - GFF160 0.40 +0.2
Or see this region's nucleotide sequence