Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1261

Experiment: Ying_AminoAcid20 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1260 and GFF1261 are separated by 1 nucleotidesGFF1261 and GFF1262 are separated by 24 nucleotides GFF1260 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 119,473 to 120,354 GFF1260 GFF1261 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 120,356 to 121,207 GFF1261 GFF1262 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 121,232 to 122,236 GFF1262 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1at 119.397 kb on - strandat 119.671 kb on + strand, within GFF1260at 119.672 kb on - strand, within GFF1260at 119.789 kb on - strand, within GFF1260at 119.813 kb on - strand, within GFF1260at 119.884 kb on + strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.885 kb on - strand, within GFF1260at 119.983 kb on + strand, within GFF1260at 119.983 kb on + strand, within GFF1260at 120.143 kb on - strand, within GFF1260at 120.143 kb on - strand, within GFF1260at 120.220 kb on + strand, within GFF1260at 120.229 kb on + strand, within GFF1260at 120.350 kb on - strandat 120.374 kb on + strandat 120.375 kb on - strandat 120.437 kb on + strandat 120.438 kb on - strandat 120.528 kb on - strand, within GFF1261at 120.672 kb on - strand, within GFF1261at 120.758 kb on + strand, within GFF1261at 120.758 kb on + strand, within GFF1261at 120.759 kb on - strand, within GFF1261at 120.759 kb on - strand, within GFF1261at 120.794 kb on + strand, within GFF1261at 120.794 kb on + strand, within GFF1261at 120.794 kb on + strand, within GFF1261at 120.795 kb on - strand, within GFF1261at 120.795 kb on - strand, within GFF1261at 120.795 kb on - strand, within GFF1261at 121.004 kb on + strand, within GFF1261at 121.004 kb on + strand, within GFF1261at 121.004 kb on + strand, within GFF1261at 121.005 kb on - strand, within GFF1261at 121.005 kb on - strand, within GFF1261at 121.005 kb on - strand, within GFF1261at 121.005 kb on - strand, within GFF1261at 121.005 kb on - strand, within GFF1261at 121.044 kb on - strand, within GFF1261at 121.044 kb on - strand, within GFF1261at 121.205 kb on + strandat 121.205 kb on + strandat 121.205 kb on + strandat 121.205 kb on + strandat 121.206 kb on - strandat 121.206 kb on - strandat 121.269 kb on - strandat 121.493 kb on + strand, within GFF1262at 121.493 kb on + strand, within GFF1262at 121.536 kb on - strand, within GFF1262at 121.907 kb on + strand, within GFF1262at 121.907 kb on + strand, within GFF1262at 121.907 kb on + strand, within GFF1262at 121.907 kb on + strand, within GFF1262at 121.907 kb on + strand, within GFF1262at 121.908 kb on - strand, within GFF1262

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
remove
119,397 - +0.0
119,671 + GFF1260 0.22 -1.9
119,672 - GFF1260 0.23 -0.8
119,789 - GFF1260 0.36 +0.6
119,813 - GFF1260 0.39 -0.3
119,884 + GFF1260 0.47 +0.4
119,885 - GFF1260 0.47 -1.4
119,885 - GFF1260 0.47 -0.3
119,885 - GFF1260 0.47 -1.4
119,885 - GFF1260 0.47 -0.5
119,885 - GFF1260 0.47 +0.0
119,885 - GFF1260 0.47 +0.1
119,885 - GFF1260 0.47 +0.3
119,983 + GFF1260 0.58 +0.9
119,983 + GFF1260 0.58 -0.1
120,143 - GFF1260 0.76 +0.2
120,143 - GFF1260 0.76 +0.3
120,220 + GFF1260 0.85 -0.0
120,229 + GFF1260 0.86 +0.1
120,350 - -0.2
120,374 + -0.4
120,375 - -0.4
120,437 + -1.1
120,438 - -1.1
120,528 - GFF1261 0.20 -0.6
120,672 - GFF1261 0.37 +0.7
120,758 + GFF1261 0.47 +0.7
120,758 + GFF1261 0.47 -0.1
120,759 - GFF1261 0.47 +0.2
120,759 - GFF1261 0.47 -0.2
120,794 + GFF1261 0.51 -0.0
120,794 + GFF1261 0.51 -0.0
120,794 + GFF1261 0.51 -0.9
120,795 - GFF1261 0.52 -0.0
120,795 - GFF1261 0.52 -0.7
120,795 - GFF1261 0.52 -0.5
121,004 + GFF1261 0.76 +0.5
121,004 + GFF1261 0.76 -0.5
121,004 + GFF1261 0.76 -0.1
121,005 - GFF1261 0.76 -0.8
121,005 - GFF1261 0.76 -0.4
121,005 - GFF1261 0.76 -0.0
121,005 - GFF1261 0.76 -0.4
121,005 - GFF1261 0.76 -0.3
121,044 - GFF1261 0.81 -1.3
121,044 - GFF1261 0.81 -0.5
121,205 + +0.1
121,205 + +0.0
121,205 + -0.2
121,205 + +0.9
121,206 - -0.7
121,206 - -0.4
121,269 - -0.2
121,493 + GFF1262 0.26 -0.3
121,493 + GFF1262 0.26 -0.2
121,536 - GFF1262 0.30 +0.7
121,907 + GFF1262 0.67 -0.8
121,907 + GFF1262 0.67 +0.6
121,907 + GFF1262 0.67 +1.0
121,907 + GFF1262 0.67 -0.0
121,907 + GFF1262 0.67 -0.6
121,908 - GFF1262 0.67 -0.1

Or see this region's nucleotide sequence