Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1198

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1196 and GFF1197 are separated by 99 nucleotidesGFF1197 and GFF1198 are separated by 1 nucleotidesGFF1198 and GFF1199 overlap by 41 nucleotidesGFF1199 and GFF1200 are separated by 2 nucleotides GFF1196 - Signal transduction histidine kinase, at 54,929 to 57,040 GFF1196 GFF1197 - Putative formate dehydrogenase-specific chaperone, at 57,140 to 57,760 GFF1197 GFF1198 - Iron-sulfur cluster-binding protein, at 57,762 to 59,831 GFF1198 GFF1199 - hypothetical protein, at 59,791 to 60,390 GFF1199 GFF1200 - FIG00431662: hypothetical protein, at 60,393 to 61,025 GFF1200 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -2 -1 0 1at 57.086 kb on + strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.151 kb on + strandat 57.151 kb on + strandat 57.152 kb on - strandat 57.211 kb on - strand, within GFF1197at 57.339 kb on + strand, within GFF1197at 57.340 kb on - strand, within GFF1197at 57.340 kb on - strand, within GFF1197at 57.361 kb on - strand, within GFF1197at 57.361 kb on - strand, within GFF1197at 57.361 kb on - strand, within GFF1197at 57.471 kb on + strand, within GFF1197at 57.471 kb on + strand, within GFF1197at 57.471 kb on + strand, within GFF1197at 57.472 kb on - strand, within GFF1197at 57.528 kb on + strand, within GFF1197at 57.673 kb on - strand, within GFF1197at 57.673 kb on - strand, within GFF1197at 57.673 kb on - strand, within GFF1197at 57.675 kb on + strand, within GFF1197at 57.675 kb on + strand, within GFF1197at 57.676 kb on - strand, within GFF1197at 57.696 kb on + strand, within GFF1197at 57.696 kb on + strand, within GFF1197at 57.696 kb on + strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.799 kb on + strandat 57.800 kb on - strandat 57.800 kb on - strandat 57.943 kb on + strandat 57.943 kb on - strandat 58.709 kb on - strand, within GFF1198at 58.759 kb on + strand, within GFF1198at 58.765 kb on + strand, within GFF1198at 58.765 kb on + strand, within GFF1198at 58.765 kb on + strand, within GFF1198at 58.765 kb on + strand, within GFF1198at 58.766 kb on - strand, within GFF1198at 58.945 kb on + strand, within GFF1198at 58.945 kb on + strand, within GFF1198at 58.946 kb on - strand, within GFF1198at 58.946 kb on - strand, within GFF1198at 59.048 kb on - strand, within GFF1198at 59.218 kb on + strand, within GFF1198at 59.218 kb on + strand, within GFF1198at 59.219 kb on - strand, within GFF1198at 59.500 kb on + strand, within GFF1198at 59.501 kb on - strand, within GFF1198at 59.501 kb on - strand, within GFF1198at 59.501 kb on - strand, within GFF1198at 59.501 kb on - strand, within GFF1198at 59.565 kb on - strand, within GFF1198at 60.056 kb on + strand, within GFF1199at 60.056 kb on + strand, within GFF1199at 60.057 kb on - strand, within GFF1199at 60.068 kb on + strand, within GFF1199at 60.068 kb on + strand, within GFF1199at 60.068 kb on + strand, within GFF1199at 60.068 kb on + strand, within GFF1199at 60.068 kb on + strand, within GFF1199at 60.069 kb on - strand, within GFF1199at 60.069 kb on - strand, within GFF1199at 60.069 kb on - strand, within GFF1199at 60.069 kb on - strand, within GFF1199at 60.095 kb on + strand, within GFF1199at 60.096 kb on - strand, within GFF1199at 60.173 kb on + strand, within GFF1199at 60.173 kb on + strand, within GFF1199at 60.174 kb on - strand, within GFF1199at 60.514 kb on + strand, within GFF1200at 60.514 kb on + strand, within GFF1200at 60.617 kb on - strand, within GFF1200at 60.617 kb on - strand, within GFF1200at 60.617 kb on - strand, within GFF1200at 60.730 kb on + strand, within GFF1200at 60.730 kb on + strand, within GFF1200at 60.731 kb on - strand, within GFF1200at 60.731 kb on - strand, within GFF1200at 60.731 kb on - strand, within GFF1200

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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57,086 + -0.1
57,087 - +0.9
57,087 - +1.4
57,087 - +0.0
57,087 - +1.4
57,151 + -0.3
57,151 + -0.8
57,152 - +0.4
57,211 - GFF1197 0.11 -0.0
57,339 + GFF1197 0.32 +0.6
57,340 - GFF1197 0.32 -0.1
57,340 - GFF1197 0.32 -0.2
57,361 - GFF1197 0.36 -0.3
57,361 - GFF1197 0.36 -0.4
57,361 - GFF1197 0.36 -0.3
57,471 + GFF1197 0.53 -0.0
57,471 + GFF1197 0.53 -0.2
57,471 + GFF1197 0.53 -0.9
57,472 - GFF1197 0.53 -0.1
57,528 + GFF1197 0.62 +0.6
57,673 - GFF1197 0.86 -0.1
57,673 - GFF1197 0.86 -0.9
57,673 - GFF1197 0.86 -0.8
57,675 + GFF1197 0.86 +0.2
57,675 + GFF1197 0.86 -1.0
57,676 - GFF1197 0.86 +1.2
57,696 + GFF1197 0.90 -0.6
57,696 + GFF1197 0.90 +0.2
57,696 + GFF1197 0.90 -0.6
57,697 - GFF1197 0.90 -0.0
57,697 - GFF1197 0.90 +0.3
57,697 - GFF1197 0.90 -0.4
57,697 - GFF1197 0.90 -0.1
57,799 + +0.0
57,800 - -0.1
57,800 - +0.3
57,943 + -0.9
57,943 - -0.7
58,709 - GFF1198 0.46 -0.2
58,759 + GFF1198 0.48 -0.7
58,765 + GFF1198 0.48 -0.4
58,765 + GFF1198 0.48 +0.1
58,765 + GFF1198 0.48 -0.1
58,765 + GFF1198 0.48 -0.6
58,766 - GFF1198 0.49 +0.6
58,945 + GFF1198 0.57 -0.6
58,945 + GFF1198 0.57 +0.2
58,946 - GFF1198 0.57 -0.1
58,946 - GFF1198 0.57 -0.1
59,048 - GFF1198 0.62 -0.0
59,218 + GFF1198 0.70 -0.9
59,218 + GFF1198 0.70 +0.2
59,219 - GFF1198 0.70 +0.6
59,500 + GFF1198 0.84 -0.2
59,501 - GFF1198 0.84 +0.7
59,501 - GFF1198 0.84 -0.1
59,501 - GFF1198 0.84 -0.2
59,501 - GFF1198 0.84 +0.2
59,565 - GFF1198 0.87 -0.2
60,056 + GFF1199 0.44 -0.5
60,056 + GFF1199 0.44 +0.3
60,057 - GFF1199 0.44 +0.9
60,068 + GFF1199 0.46 +0.1
60,068 + GFF1199 0.46 +1.4
60,068 + GFF1199 0.46 -0.4
60,068 + GFF1199 0.46 -0.0
60,068 + GFF1199 0.46 +1.0
60,069 - GFF1199 0.46 -0.3
60,069 - GFF1199 0.46 +0.1
60,069 - GFF1199 0.46 +1.0
60,069 - GFF1199 0.46 -2.1
60,095 + GFF1199 0.51 +0.2
60,096 - GFF1199 0.51 -0.2
60,173 + GFF1199 0.64 -0.2
60,173 + GFF1199 0.64 -0.5
60,174 - GFF1199 0.64 +0.2
60,514 + GFF1200 0.19 +0.1
60,514 + GFF1200 0.19 +0.6
60,617 - GFF1200 0.35 +0.1
60,617 - GFF1200 0.35 +0.0
60,617 - GFF1200 0.35 -0.1
60,730 + GFF1200 0.53 -0.6
60,730 + GFF1200 0.53 -0.8
60,731 - GFF1200 0.53 -0.1
60,731 - GFF1200 0.53 -0.6
60,731 - GFF1200 0.53 -0.1

Or see this region's nucleotide sequence