Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1168 and GFF1169 overlap by 1 nucleotides GFF1169 and GFF1170 are separated by 101 nucleotides GFF1170 and GFF1171 are separated by 62 nucleotides
GFF1168 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 26,597 to 27,568
GFF1168
GFF1169 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 27,568 to 28,014
GFF1169
GFF1170 - DNA repair protein RadC, at 28,116 to 28,808
GFF1170
GFF1171 - hypothetical protein, at 28,871 to 29,383
GFF1171
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.680 kb on + strand, within GFF1169 at 27.681 kb on - strand, within GFF1169 at 27.732 kb on - strand, within GFF1169 at 27.732 kb on - strand, within GFF1169 at 27.975 kb on - strand at 28.014 kb on + strand at 28.014 kb on + strand at 28.014 kb on + strand at 28.015 kb on - strand at 28.015 kb on - strand at 28.027 kb on + strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.080 kb on - strand at 28.080 kb on - strand at 28.080 kb on - strand at 28.084 kb on + strand at 28.084 kb on + strand at 28.084 kb on + strand at 28.084 kb on + strand at 28.085 kb on - strand at 28.085 kb on - strand at 28.085 kb on - strand at 28.319 kb on + strand, within GFF1170 at 28.468 kb on - strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.519 kb on - strand, within GFF1170 at 28.591 kb on - strand, within GFF1170 at 28.806 kb on + strand at 28.807 kb on - strand at 28.807 kb on - strand at 28.873 kb on - strand at 28.946 kb on + strand, within GFF1171 at 28.947 kb on - strand, within GFF1171
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 27,680 + GFF1169 0.25 -1.7 27,681 - GFF1169 0.25 -0.4 27,732 - GFF1169 0.37 -1.4 27,732 - GFF1169 0.37 -1.0 27,975 - -2.4 28,014 + -0.7 28,014 + -1.0 28,014 + -0.6 28,015 - +0.3 28,015 - -0.5 28,027 + +0.1 28,079 + +0.4 28,079 + +0.5 28,079 + -0.6 28,079 + +0.2 28,080 - +0.5 28,080 - -0.4 28,080 - +0.2 28,084 + -0.1 28,084 + +0.1 28,084 + -0.2 28,084 + +0.8 28,085 - -0.6 28,085 - +1.2 28,085 - -0.4 28,319 + GFF1170 0.29 +0.5 28,468 - GFF1170 0.51 +1.1 28,518 + GFF1170 0.58 +1.2 28,518 + GFF1170 0.58 +0.6 28,518 + GFF1170 0.58 +0.8 28,518 + GFF1170 0.58 +0.0 28,518 + GFF1170 0.58 -1.1 28,519 - GFF1170 0.58 +2.1 28,591 - GFF1170 0.69 -0.1 28,806 + +0.7 28,807 - +0.2 28,807 - +1.1 28,873 - +1.0 28,946 + GFF1171 0.15 -1.2 28,947 - GFF1171 0.15 -0.7
Or see this region's nucleotide sequence