Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05127 and BACOVA_05128 are separated by 28 nucleotides BACOVA_05128 and BACOVA_05129 are separated by 20 nucleotides BACOVA_05129 and BACOVA_05130 are separated by 21 nucleotides BACOVA_05130 and BACOVA_05131 are separated by 8 nucleotides
BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457
_05127
BACOVA_05128: BACOVA_05128 - ABC transporter, ATP-binding protein, at 603,486 to 604,130
_05128
BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728
_05129
BACOVA_05130: BACOVA_05130 - RNA methyltransferase, RsmE family, at 605,750 to 606,448
_05130
BACOVA_05131: BACOVA_05131 - hypothetical protein, at 606,457 to 607,050
_05131
Position (kb) 604
605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 603.172 kb on + strand, within BACOVA_05127 at 603.172 kb on + strand, within BACOVA_05127 at 603.173 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.218 kb on - strand, within BACOVA_05127 at 603.221 kb on + strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.291 kb on - strand, within BACOVA_05127 at 603.295 kb on + strand, within BACOVA_05127 at 603.296 kb on - strand, within BACOVA_05127 at 603.303 kb on - strand, within BACOVA_05127 at 603.320 kb on + strand, within BACOVA_05127 at 603.361 kb on + strand at 603.362 kb on - strand at 603.458 kb on + strand at 603.458 kb on + strand at 603.459 kb on - strand at 603.459 kb on - strand at 603.473 kb on - strand at 603.484 kb on + strand at 603.484 kb on + strand at 603.485 kb on - strand at 603.485 kb on - strand at 603.501 kb on - strand at 603.501 kb on - strand at 603.509 kb on - strand at 603.605 kb on + strand, within BACOVA_05128 at 603.763 kb on - strand, within BACOVA_05128 at 603.797 kb on + strand, within BACOVA_05128 at 603.827 kb on + strand, within BACOVA_05128 at 603.847 kb on - strand, within BACOVA_05128 at 603.868 kb on - strand, within BACOVA_05128 at 603.907 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.968 kb on - strand, within BACOVA_05128 at 603.971 kb on + strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.973 kb on + strand, within BACOVA_05128 at 603.974 kb on - strand, within BACOVA_05128 at 604.013 kb on - strand, within BACOVA_05128 at 604.021 kb on + strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.122 kb on - strand at 604.122 kb on - strand at 604.124 kb on + strand at 604.124 kb on + strand at 604.125 kb on - strand at 604.141 kb on + strand at 604.143 kb on + strand at 604.149 kb on + strand at 604.152 kb on + strand at 604.152 kb on + strand at 604.153 kb on - strand at 604.203 kb on - strand at 604.203 kb on - strand at 604.291 kb on + strand at 604.292 kb on - strand at 604.293 kb on + strand at 604.293 kb on + strand at 604.300 kb on + strand at 604.300 kb on + strand at 604.375 kb on + strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.380 kb on - strand, within BACOVA_05129 at 604.408 kb on - strand, within BACOVA_05129 at 604.461 kb on - strand, within BACOVA_05129 at 604.480 kb on - strand, within BACOVA_05129 at 604.510 kb on + strand, within BACOVA_05129 at 604.511 kb on - strand, within BACOVA_05129 at 604.511 kb on - strand, within BACOVA_05129 at 604.531 kb on - strand, within BACOVA_05129 at 604.531 kb on - strand, within BACOVA_05129 at 604.531 kb on - strand, within BACOVA_05129 at 604.537 kb on - strand, within BACOVA_05129 at 604.537 kb on - strand, within BACOVA_05129 at 604.537 kb on - strand, within BACOVA_05129 at 604.603 kb on - strand, within BACOVA_05129 at 604.641 kb on + strand, within BACOVA_05129 at 604.642 kb on - strand, within BACOVA_05129 at 604.674 kb on - strand, within BACOVA_05129 at 604.728 kb on - strand, within BACOVA_05129 at 604.728 kb on - strand, within BACOVA_05129 at 604.741 kb on + strand, within BACOVA_05129 at 604.748 kb on - strand, within BACOVA_05129 at 604.751 kb on + strand, within BACOVA_05129 at 604.792 kb on - strand, within BACOVA_05129 at 604.848 kb on + strand, within BACOVA_05129 at 604.852 kb on + strand, within BACOVA_05129 at 604.861 kb on + strand, within BACOVA_05129 at 604.962 kb on - strand, within BACOVA_05129 at 604.979 kb on + strand, within BACOVA_05129 at 604.980 kb on - strand, within BACOVA_05129 at 605.040 kb on + strand, within BACOVA_05129 at 605.077 kb on + strand, within BACOVA_05129 at 605.077 kb on + strand, within BACOVA_05129 at 605.078 kb on - strand, within BACOVA_05129 at 605.129 kb on - strand, within BACOVA_05129 at 605.132 kb on - strand, within BACOVA_05129 at 605.132 kb on - strand, within BACOVA_05129 at 605.179 kb on + strand, within BACOVA_05129 at 605.180 kb on - strand, within BACOVA_05129 at 605.210 kb on + strand, within BACOVA_05129 at 605.211 kb on - strand, within BACOVA_05129 at 605.219 kb on - strand, within BACOVA_05129 at 605.221 kb on + strand, within BACOVA_05129 at 605.339 kb on - strand, within BACOVA_05129 at 605.368 kb on + strand, within BACOVA_05129 at 605.400 kb on + strand, within BACOVA_05129 at 605.504 kb on + strand, within BACOVA_05129 at 605.567 kb on - strand, within BACOVA_05129 at 605.567 kb on - strand, within BACOVA_05129 at 605.586 kb on - strand at 605.698 kb on + strand at 605.698 kb on + strand at 605.698 kb on + strand at 605.699 kb on - strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.703 kb on - strand at 605.703 kb on - strand at 605.703 kb on - strand at 605.708 kb on - strand at 605.722 kb on + strand at 605.723 kb on - strand at 605.742 kb on + strand at 605.742 kb on + strand at 605.742 kb on + strand at 605.743 kb on - strand at 605.743 kb on - strand at 605.894 kb on + strand, within BACOVA_05130 at 605.894 kb on + strand, within BACOVA_05130 at 605.939 kb on + strand, within BACOVA_05130 at 605.940 kb on - strand, within BACOVA_05130 at 605.958 kb on + strand, within BACOVA_05130 at 605.971 kb on + strand, within BACOVA_05130 at 605.986 kb on + strand, within BACOVA_05130 at 606.109 kb on + strand, within BACOVA_05130 at 606.315 kb on + strand, within BACOVA_05130 at 606.338 kb on - strand, within BACOVA_05130 at 606.358 kb on + strand, within BACOVA_05130 at 606.359 kb on - strand, within BACOVA_05130 at 606.363 kb on - strand, within BACOVA_05130 at 606.422 kb on + strand at 606.425 kb on - strand at 606.436 kb on - strand at 606.436 kb on - strand at 606.440 kb on + strand at 606.449 kb on - strand at 606.459 kb on - strand at 606.469 kb on - strand at 606.525 kb on + strand, within BACOVA_05131 at 606.526 kb on - strand, within BACOVA_05131 at 606.529 kb on - strand, within BACOVA_05131 at 606.681 kb on + strand, within BACOVA_05131 at 606.681 kb on + strand, within BACOVA_05131
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 603,172 + BACOVA_05127 0.77 -1.0 603,172 + BACOVA_05127 0.77 +1.8 603,173 - BACOVA_05127 0.77 -1.2 603,176 - BACOVA_05127 0.78 -3.1 603,176 - BACOVA_05127 0.78 +1.2 603,218 - BACOVA_05127 0.81 -2.2 603,221 + BACOVA_05127 0.81 -0.5 603,222 - BACOVA_05127 0.81 -0.3 603,222 - BACOVA_05127 0.81 +0.5 603,291 - BACOVA_05127 0.87 +0.9 603,295 + BACOVA_05127 0.87 +0.3 603,296 - BACOVA_05127 0.87 -1.1 603,303 - BACOVA_05127 0.88 +0.3 603,320 + BACOVA_05127 0.89 +0.2 603,361 + -1.6 603,362 - -0.8 603,458 + +0.0 603,458 + -0.7 603,459 - -1.1 603,459 - +0.3 603,473 - +1.2 603,484 + +0.9 603,484 + -1.9 603,485 - +1.0 603,485 - -1.6 603,501 - -1.9 603,501 - -1.2 603,509 - +0.0 603,605 + BACOVA_05128 0.18 +0.2 603,763 - BACOVA_05128 0.43 -1.7 603,797 + BACOVA_05128 0.48 +0.3 603,827 + BACOVA_05128 0.53 -1.0 603,847 - BACOVA_05128 0.56 +1.1 603,868 - BACOVA_05128 0.59 +0.0 603,907 + BACOVA_05128 0.65 +1.7 603,967 + BACOVA_05128 0.75 +0.9 603,967 + BACOVA_05128 0.75 -2.2 603,968 - BACOVA_05128 0.75 -1.7 603,971 + BACOVA_05128 0.75 +1.2 603,972 - BACOVA_05128 0.75 +0.1 603,972 - BACOVA_05128 0.75 +0.1 603,973 + BACOVA_05128 0.76 -0.2 603,974 - BACOVA_05128 0.76 -1.0 604,013 - BACOVA_05128 0.82 -2.2 604,021 + BACOVA_05128 0.83 -0.6 604,022 - BACOVA_05128 0.83 +0.0 604,022 - BACOVA_05128 0.83 -1.5 604,022 - BACOVA_05128 0.83 -0.0 604,122 - -0.5 604,122 - -3.3 604,124 + +0.5 604,124 + -1.0 604,125 - -0.5 604,141 + -1.1 604,143 + -0.6 604,149 + -1.0 604,152 + -1.0 604,152 + -0.5 604,153 - +0.4 604,203 - -2.0 604,203 - +1.7 604,291 + -0.4 604,292 - -2.7 604,293 + -1.3 604,293 + +0.7 604,300 + -1.6 604,300 + +1.1 604,375 + BACOVA_05129 0.14 -3.2 604,376 - BACOVA_05129 0.14 +1.4 604,376 - BACOVA_05129 0.14 +1.3 604,380 - BACOVA_05129 0.15 -1.7 604,408 - BACOVA_05129 0.16 -1.2 604,461 - BACOVA_05129 0.20 +1.0 604,480 - BACOVA_05129 0.21 -0.1 604,510 + BACOVA_05129 0.23 -0.1 604,511 - BACOVA_05129 0.23 -0.3 604,511 - BACOVA_05129 0.23 -0.3 604,531 - BACOVA_05129 0.24 -1.6 604,531 - BACOVA_05129 0.24 +0.4 604,531 - BACOVA_05129 0.24 +0.1 604,537 - BACOVA_05129 0.24 -2.6 604,537 - BACOVA_05129 0.24 +1.7 604,537 - BACOVA_05129 0.24 -0.3 604,603 - BACOVA_05129 0.29 +1.0 604,641 + BACOVA_05129 0.31 -1.3 604,642 - BACOVA_05129 0.31 -1.2 604,674 - BACOVA_05129 0.33 -0.7 604,728 - BACOVA_05129 0.37 -1.5 604,728 - BACOVA_05129 0.37 -0.4 604,741 + BACOVA_05129 0.37 -0.9 604,748 - BACOVA_05129 0.38 -0.5 604,751 + BACOVA_05129 0.38 -0.2 604,792 - BACOVA_05129 0.41 +2.3 604,848 + BACOVA_05129 0.44 +0.1 604,852 + BACOVA_05129 0.44 +0.9 604,861 + BACOVA_05129 0.45 -0.1 604,962 - BACOVA_05129 0.51 -0.7 604,979 + BACOVA_05129 0.52 -2.0 604,980 - BACOVA_05129 0.53 +0.4 605,040 + BACOVA_05129 0.56 -0.1 605,077 + BACOVA_05129 0.59 -0.3 605,077 + BACOVA_05129 0.59 +0.3 605,078 - BACOVA_05129 0.59 +0.4 605,129 - BACOVA_05129 0.62 -1.2 605,132 - BACOVA_05129 0.62 -0.1 605,132 - BACOVA_05129 0.62 -1.1 605,179 + BACOVA_05129 0.65 +0.0 605,180 - BACOVA_05129 0.65 +0.5 605,210 + BACOVA_05129 0.67 -0.1 605,211 - BACOVA_05129 0.67 -0.2 605,219 - BACOVA_05129 0.68 +0.7 605,221 + BACOVA_05129 0.68 -1.0 605,339 - BACOVA_05129 0.75 -0.5 605,368 + BACOVA_05129 0.77 +2.5 605,400 + BACOVA_05129 0.79 -0.1 605,504 + BACOVA_05129 0.86 +0.1 605,567 - BACOVA_05129 0.90 +0.2 605,567 - BACOVA_05129 0.90 -0.1 605,586 - -2.8 605,698 + +0.7 605,698 + -1.7 605,698 + +1.1 605,699 - -0.5 605,702 + +1.7 605,702 + -1.2 605,702 + -0.7 605,703 - -2.8 605,703 - -0.9 605,703 - -0.8 605,708 - +0.7 605,722 + +0.1 605,723 - -1.0 605,742 + -0.3 605,742 + -1.8 605,742 + -1.1 605,743 - -0.1 605,743 - +0.6 605,894 + BACOVA_05130 0.21 -0.1 605,894 + BACOVA_05130 0.21 -1.8 605,939 + BACOVA_05130 0.27 +0.1 605,940 - BACOVA_05130 0.27 -0.6 605,958 + BACOVA_05130 0.30 -0.1 605,971 + BACOVA_05130 0.32 -0.0 605,986 + BACOVA_05130 0.34 -2.5 606,109 + BACOVA_05130 0.51 -1.1 606,315 + BACOVA_05130 0.81 -1.5 606,338 - BACOVA_05130 0.84 -1.5 606,358 + BACOVA_05130 0.87 -0.1 606,359 - BACOVA_05130 0.87 -2.0 606,363 - BACOVA_05130 0.88 +0.5 606,422 + +1.3 606,425 - +0.3 606,436 - +0.2 606,436 - -1.6 606,440 + +1.5 606,449 - +0.2 606,459 - +1.3 606,469 - -0.5 606,525 + BACOVA_05131 0.11 -0.2 606,526 - BACOVA_05131 0.12 -2.1 606,529 - BACOVA_05131 0.12 -0.7 606,681 + BACOVA_05131 0.38 +0.2 606,681 + BACOVA_05131 0.38 -1.1
Or see this region's nucleotide sequence