Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04766

Experiment: b-Glucan from Oat 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04764 and BACOVA_04765 are separated by 3 nucleotidesBACOVA_04765 and BACOVA_04766 are separated by 1 nucleotidesBACOVA_04766 and BACOVA_04767 are separated by 26 nucleotidesBACOVA_04767 and BACOVA_04768 overlap by 4 nucleotides BACOVA_04764: BACOVA_04764 - hypothetical protein, at 117,929 to 120,115 _04764 BACOVA_04765: BACOVA_04765 - hypothetical protein, at 120,119 to 120,865 _04765 BACOVA_04766: BACOVA_04766 - hypothetical protein, at 120,867 to 121,523 _04766 BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074 _04767 BACOVA_04768: BACOVA_04768 - conjugative transposon TraN protein, at 122,071 to 122,922 _04768 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.928 kb on + strandat 119.929 kb on - strandat 119.990 kb on + strandat 120.030 kb on + strandat 120.031 kb on - strandat 120.059 kb on - strandat 120.060 kb on + strandat 120.078 kb on - strandat 120.084 kb on + strandat 120.095 kb on + strandat 120.096 kb on - strandat 120.131 kb on + strandat 120.150 kb on + strandat 120.264 kb on + strand, within BACOVA_04765at 120.264 kb on + strand, within BACOVA_04765at 120.264 kb on + strand, within BACOVA_04765at 120.297 kb on + strand, within BACOVA_04765at 120.297 kb on + strand, within BACOVA_04765at 120.298 kb on - strand, within BACOVA_04765at 120.333 kb on - strand, within BACOVA_04765at 120.334 kb on + strand, within BACOVA_04765at 120.334 kb on + strand, within BACOVA_04765at 120.334 kb on + strand, within BACOVA_04765at 120.448 kb on - strand, within BACOVA_04765at 120.448 kb on - strand, within BACOVA_04765at 120.516 kb on - strand, within BACOVA_04765at 120.576 kb on + strand, within BACOVA_04765at 120.680 kb on - strand, within BACOVA_04765at 120.793 kb on - strandat 120.798 kb on - strandat 120.824 kb on + strandat 120.829 kb on + strandat 120.841 kb on + strandat 120.841 kb on + strandat 120.842 kb on - strandat 120.846 kb on - strandat 120.846 kb on - strandat 120.885 kb on + strandat 120.886 kb on - strandat 120.914 kb on - strandat 121.012 kb on + strand, within BACOVA_04766at 121.012 kb on + strand, within BACOVA_04766at 121.013 kb on - strand, within BACOVA_04766at 121.013 kb on - strand, within BACOVA_04766at 121.081 kb on + strand, within BACOVA_04766at 121.081 kb on + strand, within BACOVA_04766at 121.112 kb on + strand, within BACOVA_04766at 121.114 kb on + strand, within BACOVA_04766at 121.114 kb on + strand, within BACOVA_04766at 121.186 kb on + strand, within BACOVA_04766at 121.378 kb on + strand, within BACOVA_04766at 121.378 kb on + strand, within BACOVA_04766at 121.388 kb on - strand, within BACOVA_04766at 121.418 kb on + strand, within BACOVA_04766at 121.418 kb on + strand, within BACOVA_04766at 121.419 kb on - strand, within BACOVA_04766at 121.419 kb on - strand, within BACOVA_04766at 121.446 kb on + strand, within BACOVA_04766at 121.518 kb on + strandat 121.518 kb on + strandat 121.519 kb on - strandat 121.610 kb on + strand, within BACOVA_04767at 121.610 kb on + strand, within BACOVA_04767at 121.782 kb on + strand, within BACOVA_04767at 121.837 kb on + strand, within BACOVA_04767at 121.905 kb on + strand, within BACOVA_04767at 121.923 kb on + strand, within BACOVA_04767at 122.304 kb on + strand, within BACOVA_04768at 122.420 kb on + strand, within BACOVA_04768at 122.424 kb on + strand, within BACOVA_04768at 122.425 kb on - strand, within BACOVA_04768

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C)
remove
119,928 + +0.6
119,929 - -0.0
119,990 + -1.3
120,030 + -2.6
120,031 - +2.1
120,059 - +1.1
120,060 + -2.6
120,078 - -0.4
120,084 + -1.7
120,095 + -0.1
120,096 - -2.5
120,131 + -2.1
120,150 + -2.5
120,264 + BACOVA_04765 0.19 -1.3
120,264 + BACOVA_04765 0.19 -0.4
120,264 + BACOVA_04765 0.19 +1.6
120,297 + BACOVA_04765 0.24 +0.1
120,297 + BACOVA_04765 0.24 -0.4
120,298 - BACOVA_04765 0.24 -0.6
120,333 - BACOVA_04765 0.29 +0.0
120,334 + BACOVA_04765 0.29 +0.5
120,334 + BACOVA_04765 0.29 +1.8
120,334 + BACOVA_04765 0.29 -0.1
120,448 - BACOVA_04765 0.44 +0.7
120,448 - BACOVA_04765 0.44 +2.1
120,516 - BACOVA_04765 0.53 +0.9
120,576 + BACOVA_04765 0.61 +0.4
120,680 - BACOVA_04765 0.75 -2.7
120,793 - -1.6
120,798 - -0.7
120,824 + -1.1
120,829 + -0.6
120,841 + +0.8
120,841 + -0.3
120,842 - +1.2
120,846 - +2.4
120,846 - +0.8
120,885 + -2.3
120,886 - +1.0
120,914 - +0.0
121,012 + BACOVA_04766 0.22 -1.6
121,012 + BACOVA_04766 0.22 +0.3
121,013 - BACOVA_04766 0.22 +0.0
121,013 - BACOVA_04766 0.22 -1.0
121,081 + BACOVA_04766 0.33 -0.8
121,081 + BACOVA_04766 0.33 -1.5
121,112 + BACOVA_04766 0.37 -0.9
121,114 + BACOVA_04766 0.38 -0.1
121,114 + BACOVA_04766 0.38 -0.6
121,186 + BACOVA_04766 0.49 -0.4
121,378 + BACOVA_04766 0.78 +0.6
121,378 + BACOVA_04766 0.78 -1.9
121,388 - BACOVA_04766 0.79 -0.4
121,418 + BACOVA_04766 0.84 +0.9
121,418 + BACOVA_04766 0.84 +0.4
121,419 - BACOVA_04766 0.84 +0.6
121,419 - BACOVA_04766 0.84 -0.2
121,446 + BACOVA_04766 0.88 +1.5
121,518 + +1.0
121,518 + -0.3
121,519 - -1.3
121,610 + BACOVA_04767 0.11 -2.4
121,610 + BACOVA_04767 0.11 +1.0
121,782 + BACOVA_04767 0.44 +0.9
121,837 + BACOVA_04767 0.55 +1.4
121,905 + BACOVA_04767 0.68 -0.5
121,923 + BACOVA_04767 0.71 +0.9
122,304 + BACOVA_04768 0.27 +0.3
122,420 + BACOVA_04768 0.41 +0.0
122,424 + BACOVA_04768 0.41 +1.3
122,425 - BACOVA_04768 0.42 +0.6

Or see this region's nucleotide sequence