Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04293 and BACOVA_04294 are separated by 10 nucleotides BACOVA_04294 and BACOVA_04295 are separated by 62 nucleotides BACOVA_04295 and BACOVA_04296 are separated by 279 nucleotides
BACOVA_04293: BACOVA_04293 - TonB-linked outer membrane protein, SusC/RagA family, at 183,409 to 186,756
_04293
BACOVA_04294: BACOVA_04294 - SusD family protein, at 186,767 to 188,104
_04294
BACOVA_04295: BACOVA_04295 - hypothetical protein, at 188,167 to 188,265
_04295
BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228
_04296
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 185.792 kb on + strand, within BACOVA_04293 at 185.801 kb on - strand, within BACOVA_04293 at 185.801 kb on - strand, within BACOVA_04293 at 185.804 kb on - strand, within BACOVA_04293 at 185.806 kb on - strand, within BACOVA_04293 at 185.806 kb on - strand, within BACOVA_04293 at 185.822 kb on + strand, within BACOVA_04293 at 185.841 kb on - strand, within BACOVA_04293 at 185.862 kb on + strand, within BACOVA_04293 at 185.866 kb on - strand, within BACOVA_04293 at 185.866 kb on - strand, within BACOVA_04293 at 185.871 kb on + strand, within BACOVA_04293 at 185.884 kb on - strand, within BACOVA_04293 at 185.884 kb on - strand, within BACOVA_04293 at 185.895 kb on + strand, within BACOVA_04293 at 185.895 kb on + strand, within BACOVA_04293 at 185.896 kb on - strand, within BACOVA_04293 at 185.896 kb on - strand, within BACOVA_04293 at 185.928 kb on + strand, within BACOVA_04293 at 185.929 kb on - strand, within BACOVA_04293 at 185.959 kb on - strand, within BACOVA_04293 at 185.974 kb on + strand, within BACOVA_04293 at 185.975 kb on - strand, within BACOVA_04293 at 185.976 kb on + strand, within BACOVA_04293 at 185.999 kb on + strand, within BACOVA_04293 at 186.003 kb on + strand, within BACOVA_04293 at 186.028 kb on - strand, within BACOVA_04293 at 186.048 kb on - strand, within BACOVA_04293 at 186.065 kb on + strand, within BACOVA_04293 at 186.090 kb on + strand, within BACOVA_04293 at 186.103 kb on + strand, within BACOVA_04293 at 186.103 kb on + strand, within BACOVA_04293 at 186.223 kb on + strand, within BACOVA_04293 at 186.223 kb on + strand, within BACOVA_04293 at 186.224 kb on - strand, within BACOVA_04293 at 186.224 kb on - strand, within BACOVA_04293 at 186.230 kb on - strand, within BACOVA_04293 at 186.230 kb on - strand, within BACOVA_04293 at 186.276 kb on + strand, within BACOVA_04293 at 186.335 kb on + strand, within BACOVA_04293 at 186.354 kb on + strand, within BACOVA_04293 at 186.354 kb on + strand, within BACOVA_04293 at 186.355 kb on - strand, within BACOVA_04293 at 186.369 kb on - strand, within BACOVA_04293 at 186.385 kb on - strand, within BACOVA_04293 at 186.399 kb on - strand, within BACOVA_04293 at 186.454 kb on + strand at 186.476 kb on - strand at 186.505 kb on + strand at 186.505 kb on + strand at 186.528 kb on - strand at 186.551 kb on + strand at 186.552 kb on - strand at 186.701 kb on + strand at 186.701 kb on + strand at 186.702 kb on - strand at 186.704 kb on - strand at 186.786 kb on - strand at 186.787 kb on + strand at 186.787 kb on + strand at 186.788 kb on - strand at 186.788 kb on - strand at 186.788 kb on - strand at 186.799 kb on - strand at 186.801 kb on + strand at 186.802 kb on - strand at 186.813 kb on + strand at 186.813 kb on + strand at 186.813 kb on + strand at 186.814 kb on - strand at 186.817 kb on - strand at 186.830 kb on - strand at 186.830 kb on - strand at 186.834 kb on - strand at 186.843 kb on + strand at 186.894 kb on + strand at 186.914 kb on - strand, within BACOVA_04294 at 186.951 kb on - strand, within BACOVA_04294 at 186.966 kb on + strand, within BACOVA_04294 at 186.969 kb on + strand, within BACOVA_04294 at 186.969 kb on + strand, within BACOVA_04294 at 186.970 kb on - strand, within BACOVA_04294 at 187.072 kb on + strand, within BACOVA_04294 at 187.083 kb on - strand, within BACOVA_04294 at 187.106 kb on - strand, within BACOVA_04294 at 187.141 kb on + strand, within BACOVA_04294 at 187.142 kb on - strand, within BACOVA_04294 at 187.144 kb on + strand, within BACOVA_04294 at 187.153 kb on - strand, within BACOVA_04294 at 187.166 kb on + strand, within BACOVA_04294 at 187.167 kb on - strand, within BACOVA_04294 at 187.181 kb on + strand, within BACOVA_04294 at 187.183 kb on + strand, within BACOVA_04294 at 187.184 kb on - strand, within BACOVA_04294 at 187.184 kb on - strand, within BACOVA_04294 at 187.220 kb on + strand, within BACOVA_04294 at 187.220 kb on + strand, within BACOVA_04294 at 187.221 kb on - strand, within BACOVA_04294 at 187.222 kb on + strand, within BACOVA_04294 at 187.223 kb on - strand, within BACOVA_04294 at 187.223 kb on - strand, within BACOVA_04294 at 187.288 kb on - strand, within BACOVA_04294 at 187.288 kb on - strand, within BACOVA_04294 at 187.315 kb on - strand, within BACOVA_04294 at 187.316 kb on + strand, within BACOVA_04294 at 187.316 kb on + strand, within BACOVA_04294 at 187.317 kb on - strand, within BACOVA_04294 at 187.318 kb on + strand, within BACOVA_04294 at 187.319 kb on - strand, within BACOVA_04294 at 187.338 kb on + strand, within BACOVA_04294 at 187.338 kb on + strand, within BACOVA_04294 at 187.339 kb on - strand, within BACOVA_04294 at 187.339 kb on - strand, within BACOVA_04294 at 187.364 kb on - strand, within BACOVA_04294 at 187.364 kb on - strand, within BACOVA_04294 at 187.386 kb on - strand, within BACOVA_04294 at 187.407 kb on + strand, within BACOVA_04294 at 187.408 kb on - strand, within BACOVA_04294 at 187.413 kb on + strand, within BACOVA_04294 at 187.437 kb on - strand, within BACOVA_04294 at 187.441 kb on - strand, within BACOVA_04294 at 187.441 kb on - strand, within BACOVA_04294 at 187.441 kb on - strand, within BACOVA_04294 at 187.466 kb on + strand, within BACOVA_04294 at 187.483 kb on + strand, within BACOVA_04294 at 187.484 kb on - strand, within BACOVA_04294 at 187.485 kb on + strand, within BACOVA_04294 at 187.485 kb on + strand, within BACOVA_04294 at 187.486 kb on - strand, within BACOVA_04294 at 187.486 kb on - strand, within BACOVA_04294 at 187.486 kb on - strand, within BACOVA_04294 at 187.488 kb on + strand, within BACOVA_04294 at 187.509 kb on + strand, within BACOVA_04294 at 187.540 kb on + strand, within BACOVA_04294 at 187.550 kb on - strand, within BACOVA_04294 at 187.598 kb on + strand, within BACOVA_04294 at 187.614 kb on + strand, within BACOVA_04294 at 187.640 kb on + strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.702 kb on + strand, within BACOVA_04294 at 187.739 kb on - strand, within BACOVA_04294 at 187.801 kb on - strand, within BACOVA_04294 at 187.847 kb on - strand, within BACOVA_04294 at 187.847 kb on - strand, within BACOVA_04294 at 187.882 kb on - strand, within BACOVA_04294 at 187.906 kb on - strand, within BACOVA_04294 at 188.016 kb on + strand at 188.017 kb on - strand at 188.031 kb on + strand at 188.032 kb on - strand at 188.083 kb on + strand at 188.105 kb on + strand at 188.145 kb on + strand at 188.145 kb on + strand at 188.145 kb on + strand at 188.146 kb on - strand at 188.197 kb on - strand, within BACOVA_04295 at 188.197 kb on - strand, within BACOVA_04295 at 188.201 kb on - strand, within BACOVA_04295 at 188.273 kb on + strand at 188.303 kb on + strand at 188.303 kb on + strand at 188.303 kb on + strand at 188.316 kb on - strand at 188.321 kb on - strand at 188.321 kb on - strand at 188.331 kb on - strand at 188.338 kb on + strand at 188.408 kb on + strand at 188.409 kb on - strand at 188.410 kb on + strand at 188.410 kb on + strand at 188.411 kb on - strand at 188.500 kb on + strand at 188.501 kb on - strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.503 kb on - strand at 188.503 kb on - strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.505 kb on - strand at 188.505 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.543 kb on + strand at 188.543 kb on + strand at 188.556 kb on + strand at 188.556 kb on + strand at 188.559 kb on + strand at 188.560 kb on - strand at 188.560 kb on - strand at 188.582 kb on + strand at 188.595 kb on - strand at 188.598 kb on + strand at 188.601 kb on + strand at 188.677 kb on + strand, within BACOVA_04296 at 188.677 kb on + strand, within BACOVA_04296 at 188.683 kb on - strand, within BACOVA_04296 at 188.685 kb on + strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.716 kb on + strand, within BACOVA_04296 at 188.747 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.815 kb on - strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.859 kb on - strand, within BACOVA_04296 at 188.902 kb on + strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.951 kb on + strand, within BACOVA_04296 at 188.979 kb on - strand, within BACOVA_04296 at 188.991 kb on + strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 189.098 kb on + strand, within BACOVA_04296
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 185,792 + BACOVA_04293 0.71 -0.1 185,801 - BACOVA_04293 0.71 -1.7 185,801 - BACOVA_04293 0.71 -1.3 185,804 - BACOVA_04293 0.72 -1.2 185,806 - BACOVA_04293 0.72 -1.2 185,806 - BACOVA_04293 0.72 +0.8 185,822 + BACOVA_04293 0.72 -1.0 185,841 - BACOVA_04293 0.73 -0.8 185,862 + BACOVA_04293 0.73 -0.2 185,866 - BACOVA_04293 0.73 +0.9 185,866 - BACOVA_04293 0.73 -1.1 185,871 + BACOVA_04293 0.74 -1.8 185,884 - BACOVA_04293 0.74 -0.8 185,884 - BACOVA_04293 0.74 +0.5 185,895 + BACOVA_04293 0.74 -0.4 185,895 + BACOVA_04293 0.74 -0.6 185,896 - BACOVA_04293 0.74 -1.9 185,896 - BACOVA_04293 0.74 -1.0 185,928 + BACOVA_04293 0.75 -2.9 185,929 - BACOVA_04293 0.75 +0.1 185,959 - BACOVA_04293 0.76 +0.0 185,974 + BACOVA_04293 0.77 +1.6 185,975 - BACOVA_04293 0.77 -1.0 185,976 + BACOVA_04293 0.77 -1.8 185,999 + BACOVA_04293 0.77 -1.6 186,003 + BACOVA_04293 0.77 +1.5 186,028 - BACOVA_04293 0.78 +0.3 186,048 - BACOVA_04293 0.79 -0.2 186,065 + BACOVA_04293 0.79 -0.6 186,090 + BACOVA_04293 0.80 +1.0 186,103 + BACOVA_04293 0.80 +1.0 186,103 + BACOVA_04293 0.80 -1.1 186,223 + BACOVA_04293 0.84 +1.4 186,223 + BACOVA_04293 0.84 +0.4 186,224 - BACOVA_04293 0.84 -1.5 186,224 - BACOVA_04293 0.84 +0.6 186,230 - BACOVA_04293 0.84 +0.8 186,230 - BACOVA_04293 0.84 -1.6 186,276 + BACOVA_04293 0.86 -0.8 186,335 + BACOVA_04293 0.87 -0.5 186,354 + BACOVA_04293 0.88 -0.2 186,354 + BACOVA_04293 0.88 +1.1 186,355 - BACOVA_04293 0.88 +0.2 186,369 - BACOVA_04293 0.88 -0.8 186,385 - BACOVA_04293 0.89 +0.3 186,399 - BACOVA_04293 0.89 +1.6 186,454 + +0.9 186,476 - -0.1 186,505 + -0.6 186,505 + +0.8 186,528 - -0.1 186,551 + -2.0 186,552 - -3.7 186,701 + +1.2 186,701 + -1.3 186,702 - +1.6 186,704 - -1.6 186,786 - -0.4 186,787 + +0.8 186,787 + +0.4 186,788 - -0.2 186,788 - -1.3 186,788 - +0.6 186,799 - -0.3 186,801 + +2.3 186,802 - +0.6 186,813 + -0.6 186,813 + +0.2 186,813 + -1.6 186,814 - -0.5 186,817 - +0.2 186,830 - +1.2 186,830 - -0.9 186,834 - -0.4 186,843 + -0.5 186,894 + -1.1 186,914 - BACOVA_04294 0.11 +0.8 186,951 - BACOVA_04294 0.14 +1.9 186,966 + BACOVA_04294 0.15 -0.2 186,969 + BACOVA_04294 0.15 +0.6 186,969 + BACOVA_04294 0.15 +0.0 186,970 - BACOVA_04294 0.15 -0.0 187,072 + BACOVA_04294 0.23 +2.4 187,083 - BACOVA_04294 0.24 -1.2 187,106 - BACOVA_04294 0.25 +1.1 187,141 + BACOVA_04294 0.28 +0.2 187,142 - BACOVA_04294 0.28 +1.0 187,144 + BACOVA_04294 0.28 +1.4 187,153 - BACOVA_04294 0.29 +0.0 187,166 + BACOVA_04294 0.30 +0.3 187,167 - BACOVA_04294 0.30 -0.2 187,181 + BACOVA_04294 0.31 +0.2 187,183 + BACOVA_04294 0.31 +0.4 187,184 - BACOVA_04294 0.31 +1.2 187,184 - BACOVA_04294 0.31 -1.1 187,220 + BACOVA_04294 0.34 -0.2 187,220 + BACOVA_04294 0.34 +1.2 187,221 - BACOVA_04294 0.34 -0.2 187,222 + BACOVA_04294 0.34 +1.6 187,223 - BACOVA_04294 0.34 +1.0 187,223 - BACOVA_04294 0.34 +0.3 187,288 - BACOVA_04294 0.39 +1.6 187,288 - BACOVA_04294 0.39 -1.0 187,315 - BACOVA_04294 0.41 +0.6 187,316 + BACOVA_04294 0.41 -1.3 187,316 + BACOVA_04294 0.41 -0.4 187,317 - BACOVA_04294 0.41 -1.4 187,318 + BACOVA_04294 0.41 +0.7 187,319 - BACOVA_04294 0.41 +0.4 187,338 + BACOVA_04294 0.43 -0.6 187,338 + BACOVA_04294 0.43 +1.3 187,339 - BACOVA_04294 0.43 +0.0 187,339 - BACOVA_04294 0.43 -0.1 187,364 - BACOVA_04294 0.45 -0.5 187,364 - BACOVA_04294 0.45 -0.1 187,386 - BACOVA_04294 0.46 -0.2 187,407 + BACOVA_04294 0.48 +0.6 187,408 - BACOVA_04294 0.48 -0.7 187,413 + BACOVA_04294 0.48 +0.5 187,437 - BACOVA_04294 0.50 +0.2 187,441 - BACOVA_04294 0.50 +0.3 187,441 - BACOVA_04294 0.50 +0.0 187,441 - BACOVA_04294 0.50 -2.0 187,466 + BACOVA_04294 0.52 +0.7 187,483 + BACOVA_04294 0.54 -1.3 187,484 - BACOVA_04294 0.54 +0.2 187,485 + BACOVA_04294 0.54 -1.1 187,485 + BACOVA_04294 0.54 -1.6 187,486 - BACOVA_04294 0.54 -0.2 187,486 - BACOVA_04294 0.54 -1.2 187,486 - BACOVA_04294 0.54 -0.2 187,488 + BACOVA_04294 0.54 -1.3 187,509 + BACOVA_04294 0.55 +0.4 187,540 + BACOVA_04294 0.58 +1.0 187,550 - BACOVA_04294 0.59 -1.0 187,598 + BACOVA_04294 0.62 +1.7 187,614 + BACOVA_04294 0.63 +0.3 187,640 + BACOVA_04294 0.65 +0.4 187,677 - BACOVA_04294 0.68 +3.1 187,677 - BACOVA_04294 0.68 +0.2 187,677 - BACOVA_04294 0.68 -0.2 187,702 + BACOVA_04294 0.70 -1.2 187,739 - BACOVA_04294 0.73 +0.2 187,801 - BACOVA_04294 0.77 -0.8 187,847 - BACOVA_04294 0.81 -2.2 187,847 - BACOVA_04294 0.81 -0.2 187,882 - BACOVA_04294 0.83 +0.6 187,906 - BACOVA_04294 0.85 +1.1 188,016 + +0.2 188,017 - -0.1 188,031 + -1.1 188,032 - -0.1 188,083 + -0.5 188,105 + -1.3 188,145 + -1.0 188,145 + +0.4 188,145 + -1.6 188,146 - -1.4 188,197 - BACOVA_04295 0.30 -0.1 188,197 - BACOVA_04295 0.30 -1.5 188,201 - BACOVA_04295 0.34 -0.3 188,273 + +2.2 188,303 + +0.4 188,303 + -0.6 188,303 + -0.7 188,316 - -0.7 188,321 - +0.8 188,321 - -0.6 188,331 - -0.0 188,338 + -1.4 188,408 + -0.3 188,409 - -0.7 188,410 + -2.1 188,410 + +0.9 188,411 - +0.0 188,500 + -1.0 188,501 - -0.1 188,502 + -1.0 188,502 + +0.9 188,502 + +1.8 188,503 - +0.1 188,503 - +0.3 188,504 + +0.0 188,504 + -2.2 188,504 + +0.3 188,505 - +0.7 188,505 - -1.1 188,507 - +0.8 188,507 - -0.4 188,507 - -1.4 188,507 - +0.5 188,543 + -0.8 188,543 + -0.4 188,556 + -1.6 188,556 + -0.3 188,559 + -1.1 188,560 - +0.2 188,560 - +1.1 188,582 + +1.9 188,595 - -1.3 188,598 + -0.5 188,601 + +2.3 188,677 + BACOVA_04296 0.19 +0.6 188,677 + BACOVA_04296 0.19 -0.4 188,683 - BACOVA_04296 0.20 +0.8 188,685 + BACOVA_04296 0.20 -0.4 188,686 - BACOVA_04296 0.21 +0.2 188,686 - BACOVA_04296 0.21 -1.7 188,716 + BACOVA_04296 0.25 -0.1 188,747 + BACOVA_04296 0.30 -0.8 188,756 + BACOVA_04296 0.31 +1.8 188,756 + BACOVA_04296 0.31 -0.9 188,756 + BACOVA_04296 0.31 -2.8 188,815 - BACOVA_04296 0.39 +0.5 188,858 + BACOVA_04296 0.46 -0.6 188,858 + BACOVA_04296 0.46 +0.6 188,859 - BACOVA_04296 0.46 -0.2 188,902 + BACOVA_04296 0.52 +0.2 188,921 - BACOVA_04296 0.55 -0.1 188,921 - BACOVA_04296 0.55 -1.3 188,921 - BACOVA_04296 0.55 -0.7 188,951 + BACOVA_04296 0.59 -1.1 188,979 - BACOVA_04296 0.63 -0.1 188,991 + BACOVA_04296 0.65 -0.2 188,992 - BACOVA_04296 0.65 -2.7 188,992 - BACOVA_04296 0.65 +0.6 189,098 + BACOVA_04296 0.81 +1.5
Or see this region's nucleotide sequence