Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02585 and BACOVA_02586 are separated by 28 nucleotides BACOVA_02586 and BACOVA_02587 are separated by 27 nucleotides BACOVA_02587 and BACOVA_02588 are separated by 81 nucleotides
BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652
_02585
BACOVA_02586: BACOVA_02586 - putative bacteriocin export ABC transporter, lactococcin 972 group, at 354,681 to 355,355
_02586
BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704
_02587
BACOVA_02588: BACOVA_02588 - putative 8-amino-7-oxononanoate synthase, at 357,786 to 358,970
_02588
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.402 kb on + strand, within BACOVA_02585 at 354.513 kb on - strand at 354.513 kb on - strand at 354.574 kb on - strand at 354.574 kb on - strand at 354.592 kb on + strand at 354.599 kb on - strand at 354.637 kb on - strand at 354.674 kb on + strand at 354.680 kb on + strand at 354.687 kb on - strand at 354.687 kb on - strand at 354.912 kb on - strand, within BACOVA_02586 at 355.008 kb on + strand, within BACOVA_02586 at 355.011 kb on - strand, within BACOVA_02586 at 355.017 kb on - strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.055 kb on + strand, within BACOVA_02586 at 355.346 kb on + strand at 355.349 kb on + strand at 355.365 kb on - strand at 355.379 kb on + strand at 355.423 kb on + strand at 355.423 kb on + strand at 355.424 kb on - strand at 355.428 kb on + strand at 355.448 kb on + strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.449 kb on - strand at 355.451 kb on + strand at 355.452 kb on - strand at 355.495 kb on + strand at 355.522 kb on - strand at 355.555 kb on - strand at 355.601 kb on + strand at 355.627 kb on - strand, within BACOVA_02587 at 355.660 kb on + strand, within BACOVA_02587 at 355.739 kb on - strand, within BACOVA_02587 at 355.739 kb on - strand, within BACOVA_02587 at 355.774 kb on + strand, within BACOVA_02587 at 355.821 kb on - strand, within BACOVA_02587 at 355.871 kb on + strand, within BACOVA_02587 at 355.895 kb on + strand, within BACOVA_02587 at 355.924 kb on + strand, within BACOVA_02587 at 355.925 kb on - strand, within BACOVA_02587 at 355.961 kb on + strand, within BACOVA_02587 at 355.961 kb on + strand, within BACOVA_02587 at 355.963 kb on + strand, within BACOVA_02587 at 355.963 kb on + strand, within BACOVA_02587 at 355.964 kb on - strand, within BACOVA_02587 at 355.964 kb on - strand, within BACOVA_02587 at 355.983 kb on - strand, within BACOVA_02587 at 355.983 kb on - strand, within BACOVA_02587 at 356.027 kb on + strand, within BACOVA_02587 at 356.045 kb on + strand, within BACOVA_02587 at 356.046 kb on - strand, within BACOVA_02587 at 356.048 kb on - strand, within BACOVA_02587 at 356.048 kb on - strand, within BACOVA_02587 at 356.048 kb on - strand, within BACOVA_02587 at 356.099 kb on + strand, within BACOVA_02587 at 356.100 kb on - strand, within BACOVA_02587 at 356.187 kb on - strand, within BACOVA_02587 at 356.205 kb on - strand, within BACOVA_02587 at 356.205 kb on - strand, within BACOVA_02587 at 356.205 kb on - strand, within BACOVA_02587 at 356.233 kb on + strand, within BACOVA_02587 at 356.246 kb on - strand, within BACOVA_02587 at 356.343 kb on - strand, within BACOVA_02587 at 356.359 kb on + strand, within BACOVA_02587 at 356.389 kb on + strand, within BACOVA_02587 at 356.395 kb on + strand, within BACOVA_02587 at 356.396 kb on - strand, within BACOVA_02587 at 356.468 kb on - strand, within BACOVA_02587 at 356.477 kb on + strand, within BACOVA_02587 at 356.478 kb on - strand, within BACOVA_02587 at 356.479 kb on + strand, within BACOVA_02587 at 356.480 kb on - strand, within BACOVA_02587 at 356.480 kb on - strand, within BACOVA_02587 at 356.482 kb on + strand, within BACOVA_02587 at 356.483 kb on - strand, within BACOVA_02587 at 356.522 kb on + strand, within BACOVA_02587 at 356.524 kb on + strand, within BACOVA_02587 at 356.524 kb on + strand, within BACOVA_02587 at 356.529 kb on + strand, within BACOVA_02587 at 356.529 kb on + strand, within BACOVA_02587 at 356.534 kb on + strand, within BACOVA_02587 at 356.534 kb on + strand, within BACOVA_02587 at 356.535 kb on - strand, within BACOVA_02587 at 356.601 kb on - strand, within BACOVA_02587 at 356.633 kb on + strand, within BACOVA_02587 at 356.634 kb on - strand, within BACOVA_02587 at 356.635 kb on + strand, within BACOVA_02587 at 356.675 kb on + strand, within BACOVA_02587 at 356.676 kb on - strand, within BACOVA_02587 at 356.717 kb on + strand, within BACOVA_02587 at 356.736 kb on + strand, within BACOVA_02587 at 356.736 kb on + strand, within BACOVA_02587 at 356.768 kb on - strand, within BACOVA_02587 at 356.820 kb on - strand, within BACOVA_02587 at 356.890 kb on - strand, within BACOVA_02587 at 356.892 kb on - strand, within BACOVA_02587 at 356.926 kb on - strand, within BACOVA_02587 at 356.991 kb on - strand, within BACOVA_02587 at 357.001 kb on + strand, within BACOVA_02587 at 357.002 kb on - strand, within BACOVA_02587 at 357.002 kb on - strand, within BACOVA_02587 at 357.064 kb on + strand, within BACOVA_02587 at 357.075 kb on + strand, within BACOVA_02587 at 357.076 kb on - strand, within BACOVA_02587 at 357.078 kb on - strand, within BACOVA_02587 at 357.080 kb on - strand, within BACOVA_02587 at 357.108 kb on + strand, within BACOVA_02587 at 357.141 kb on - strand, within BACOVA_02587 at 357.177 kb on - strand, within BACOVA_02587 at 357.177 kb on - strand, within BACOVA_02587 at 357.179 kb on + strand, within BACOVA_02587 at 357.180 kb on - strand, within BACOVA_02587 at 357.180 kb on - strand, within BACOVA_02587 at 357.243 kb on - strand, within BACOVA_02587 at 357.300 kb on + strand, within BACOVA_02587 at 357.300 kb on + strand, within BACOVA_02587 at 357.301 kb on - strand, within BACOVA_02587 at 357.303 kb on - strand, within BACOVA_02587 at 357.341 kb on - strand, within BACOVA_02587 at 357.352 kb on + strand, within BACOVA_02587 at 357.353 kb on - strand, within BACOVA_02587 at 357.356 kb on + strand, within BACOVA_02587 at 357.356 kb on + strand, within BACOVA_02587 at 357.359 kb on - strand, within BACOVA_02587 at 357.428 kb on + strand, within BACOVA_02587 at 357.430 kb on + strand, within BACOVA_02587 at 357.430 kb on + strand, within BACOVA_02587 at 357.431 kb on - strand, within BACOVA_02587 at 357.454 kb on + strand, within BACOVA_02587 at 357.454 kb on + strand, within BACOVA_02587 at 357.460 kb on + strand, within BACOVA_02587 at 357.473 kb on - strand at 357.497 kb on - strand at 357.535 kb on - strand at 357.535 kb on - strand at 357.566 kb on + strand at 357.583 kb on + strand at 357.607 kb on + strand at 357.607 kb on + strand at 357.607 kb on + strand at 357.608 kb on - strand at 357.614 kb on - strand at 357.707 kb on + strand at 357.752 kb on - strand at 357.774 kb on - strand at 357.774 kb on - strand at 357.788 kb on - strand at 357.807 kb on - strand at 357.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 354,402 + BACOVA_02585 0.90 +1.6 354,513 - +0.2 354,513 - -0.3 354,574 - -0.1 354,574 - -0.5 354,592 + -0.7 354,599 - +0.9 354,637 - -0.1 354,674 + +1.1 354,680 + +0.3 354,687 - +1.2 354,687 - +0.5 354,912 - BACOVA_02586 0.34 -1.7 355,008 + BACOVA_02586 0.48 +1.7 355,011 - BACOVA_02586 0.49 -0.3 355,017 - BACOVA_02586 0.50 -0.8 355,055 + BACOVA_02586 0.55 +0.7 355,055 + BACOVA_02586 0.55 +0.4 355,346 + -0.5 355,349 + -1.3 355,365 - -0.2 355,379 + -0.3 355,423 + +0.7 355,423 + -1.4 355,424 - -1.1 355,428 + -0.6 355,448 + +0.8 355,449 - +0.7 355,449 - -0.2 355,449 - -1.3 355,451 + -2.4 355,452 - -0.3 355,495 + -0.3 355,522 - +0.3 355,555 - +2.0 355,601 + -0.8 355,627 - BACOVA_02587 0.11 -1.0 355,660 + BACOVA_02587 0.12 -0.7 355,739 - BACOVA_02587 0.15 -1.3 355,739 - BACOVA_02587 0.15 -1.2 355,774 + BACOVA_02587 0.17 -0.5 355,821 - BACOVA_02587 0.19 -2.0 355,871 + BACOVA_02587 0.21 +0.9 355,895 + BACOVA_02587 0.22 +0.8 355,924 + BACOVA_02587 0.23 +0.1 355,925 - BACOVA_02587 0.23 +0.5 355,961 + BACOVA_02587 0.25 +0.9 355,961 + BACOVA_02587 0.25 +0.5 355,963 + BACOVA_02587 0.25 -1.1 355,963 + BACOVA_02587 0.25 +0.7 355,964 - BACOVA_02587 0.25 -1.0 355,964 - BACOVA_02587 0.25 -0.9 355,983 - BACOVA_02587 0.26 -0.9 355,983 - BACOVA_02587 0.26 +1.7 356,027 + BACOVA_02587 0.28 +1.7 356,045 + BACOVA_02587 0.29 +0.5 356,046 - BACOVA_02587 0.29 -1.8 356,048 - BACOVA_02587 0.29 -1.0 356,048 - BACOVA_02587 0.29 -2.1 356,048 - BACOVA_02587 0.29 +1.7 356,099 + BACOVA_02587 0.31 -2.4 356,100 - BACOVA_02587 0.31 -1.6 356,187 - BACOVA_02587 0.35 -1.2 356,205 - BACOVA_02587 0.35 -0.6 356,205 - BACOVA_02587 0.35 +0.6 356,205 - BACOVA_02587 0.35 -0.9 356,233 + BACOVA_02587 0.37 +0.9 356,246 - BACOVA_02587 0.37 -2.1 356,343 - BACOVA_02587 0.41 -1.4 356,359 + BACOVA_02587 0.42 +2.0 356,389 + BACOVA_02587 0.43 +1.3 356,395 + BACOVA_02587 0.44 -0.2 356,396 - BACOVA_02587 0.44 +0.5 356,468 - BACOVA_02587 0.47 -0.1 356,477 + BACOVA_02587 0.47 +0.1 356,478 - BACOVA_02587 0.47 -1.0 356,479 + BACOVA_02587 0.47 -1.8 356,480 - BACOVA_02587 0.47 -0.1 356,480 - BACOVA_02587 0.47 -0.7 356,482 + BACOVA_02587 0.47 +0.2 356,483 - BACOVA_02587 0.47 +0.9 356,522 + BACOVA_02587 0.49 +0.9 356,524 + BACOVA_02587 0.49 -0.7 356,524 + BACOVA_02587 0.49 +0.0 356,529 + BACOVA_02587 0.49 -1.2 356,529 + BACOVA_02587 0.49 -0.7 356,534 + BACOVA_02587 0.50 +0.1 356,534 + BACOVA_02587 0.50 -0.1 356,535 - BACOVA_02587 0.50 +1.9 356,601 - BACOVA_02587 0.52 +0.3 356,633 + BACOVA_02587 0.54 -1.9 356,634 - BACOVA_02587 0.54 +1.7 356,635 + BACOVA_02587 0.54 +0.1 356,675 + BACOVA_02587 0.56 -1.1 356,676 - BACOVA_02587 0.56 +0.5 356,717 + BACOVA_02587 0.57 +0.1 356,736 + BACOVA_02587 0.58 +1.5 356,736 + BACOVA_02587 0.58 -0.7 356,768 - BACOVA_02587 0.60 -1.9 356,820 - BACOVA_02587 0.62 +0.7 356,890 - BACOVA_02587 0.65 +1.7 356,892 - BACOVA_02587 0.65 +1.2 356,926 - BACOVA_02587 0.66 +0.3 356,991 - BACOVA_02587 0.69 +0.3 357,001 + BACOVA_02587 0.70 -0.3 357,002 - BACOVA_02587 0.70 -1.9 357,002 - BACOVA_02587 0.70 +0.9 357,064 + BACOVA_02587 0.72 +0.6 357,075 + BACOVA_02587 0.73 -0.9 357,076 - BACOVA_02587 0.73 +0.0 357,078 - BACOVA_02587 0.73 -0.7 357,080 - BACOVA_02587 0.73 -1.1 357,108 + BACOVA_02587 0.74 +0.4 357,141 - BACOVA_02587 0.76 +1.2 357,177 - BACOVA_02587 0.77 -0.5 357,177 - BACOVA_02587 0.77 +0.1 357,179 + BACOVA_02587 0.77 -2.1 357,180 - BACOVA_02587 0.77 +0.4 357,180 - BACOVA_02587 0.77 +0.6 357,243 - BACOVA_02587 0.80 -0.7 357,300 + BACOVA_02587 0.83 -0.9 357,300 + BACOVA_02587 0.83 -0.1 357,301 - BACOVA_02587 0.83 -0.7 357,303 - BACOVA_02587 0.83 -0.9 357,341 - BACOVA_02587 0.84 -1.6 357,352 + BACOVA_02587 0.85 +0.8 357,353 - BACOVA_02587 0.85 +0.0 357,356 + BACOVA_02587 0.85 +0.5 357,356 + BACOVA_02587 0.85 +0.1 357,359 - BACOVA_02587 0.85 -0.9 357,428 + BACOVA_02587 0.88 -0.4 357,430 + BACOVA_02587 0.88 +0.6 357,430 + BACOVA_02587 0.88 -1.4 357,431 - BACOVA_02587 0.88 +0.1 357,454 + BACOVA_02587 0.89 +0.9 357,454 + BACOVA_02587 0.89 +0.1 357,460 + BACOVA_02587 0.89 -2.0 357,473 - -0.1 357,497 - -0.4 357,535 - +1.1 357,535 - +0.3 357,566 + -1.8 357,583 + -1.6 357,607 + +0.8 357,607 + +0.4 357,607 + +0.7 357,608 - +0.0 357,614 - +1.0 357,707 + +0.7 357,752 - -0.7 357,774 - +0.2 357,774 - -0.5 357,788 - +0.7 357,807 - -1.1 357,807 - -0.5
Or see this region's nucleotide sequence