Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01390 and BACOVA_01391 are separated by 10 nucleotides BACOVA_01391 and BACOVA_01392 overlap by 14 nucleotides BACOVA_01392 and BACOVA_01393 overlap by 6 nucleotides
BACOVA_01390: BACOVA_01390 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 56,692 to 58,056
_01390
BACOVA_01391: BACOVA_01391 - transcriptional regulator, TetR family, at 58,067 to 58,675
_01391
BACOVA_01392: BACOVA_01392 - hypothetical protein, at 58,662 to 58,784
_01392
BACOVA_01393: BACOVA_01393 - hypothetical protein, at 58,779 to 59,654
_01393
Position (kb) 58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.176 kb on + strand, within BACOVA_01390 at 57.192 kb on + strand, within BACOVA_01390 at 57.196 kb on + strand, within BACOVA_01390 at 57.197 kb on - strand, within BACOVA_01390 at 57.197 kb on - strand, within BACOVA_01390 at 57.197 kb on - strand, within BACOVA_01390 at 57.199 kb on + strand, within BACOVA_01390 at 57.199 kb on + strand, within BACOVA_01390 at 57.200 kb on - strand, within BACOVA_01390 at 57.233 kb on + strand, within BACOVA_01390 at 57.341 kb on - strand, within BACOVA_01390 at 57.348 kb on + strand, within BACOVA_01390 at 57.350 kb on + strand, within BACOVA_01390 at 57.350 kb on - strand, within BACOVA_01390 at 57.351 kb on - strand, within BACOVA_01390 at 57.354 kb on + strand, within BACOVA_01390 at 57.498 kb on - strand, within BACOVA_01390 at 57.559 kb on + strand, within BACOVA_01390 at 57.590 kb on - strand, within BACOVA_01390 at 57.856 kb on + strand, within BACOVA_01390 at 57.857 kb on - strand, within BACOVA_01390 at 57.986 kb on + strand at 58.017 kb on - strand at 58.055 kb on - strand at 58.063 kb on - strand at 58.063 kb on - strand at 58.063 kb on - strand at 58.063 kb on - strand at 58.066 kb on + strand at 58.066 kb on + strand at 58.066 kb on + strand at 58.066 kb on + strand at 58.104 kb on - strand at 58.156 kb on + strand, within BACOVA_01391 at 58.157 kb on - strand, within BACOVA_01391 at 58.158 kb on + strand, within BACOVA_01391 at 58.194 kb on - strand, within BACOVA_01391 at 58.285 kb on - strand, within BACOVA_01391 at 58.285 kb on - strand, within BACOVA_01391 at 58.379 kb on - strand, within BACOVA_01391 at 58.465 kb on + strand, within BACOVA_01391 at 58.576 kb on + strand, within BACOVA_01391 at 58.576 kb on + strand, within BACOVA_01391 at 58.577 kb on - strand, within BACOVA_01391 at 58.577 kb on - strand, within BACOVA_01391 at 58.628 kb on + strand at 58.629 kb on - strand at 58.629 kb on - strand at 58.631 kb on - strand at 58.654 kb on + strand at 58.721 kb on - strand, within BACOVA_01392 at 58.747 kb on + strand, within BACOVA_01392 at 58.747 kb on + strand, within BACOVA_01392 at 58.748 kb on - strand, within BACOVA_01392 at 58.754 kb on + strand, within BACOVA_01392 at 58.755 kb on - strand, within BACOVA_01392 at 58.755 kb on - strand, within BACOVA_01392 at 58.755 kb on - strand, within BACOVA_01392 at 58.801 kb on - strand at 58.839 kb on + strand at 58.924 kb on + strand, within BACOVA_01393 at 58.946 kb on + strand, within BACOVA_01393 at 58.947 kb on - strand, within BACOVA_01393 at 58.979 kb on + strand, within BACOVA_01393 at 58.980 kb on - strand, within BACOVA_01393 at 58.980 kb on - strand, within BACOVA_01393 at 58.980 kb on - strand, within BACOVA_01393 at 59.067 kb on + strand, within BACOVA_01393 at 59.067 kb on + strand, within BACOVA_01393 at 59.072 kb on + strand, within BACOVA_01393 at 59.195 kb on + strand, within BACOVA_01393 at 59.326 kb on + strand, within BACOVA_01393 at 59.407 kb on + strand, within BACOVA_01393 at 59.407 kb on + strand, within BACOVA_01393 at 59.407 kb on + strand, within BACOVA_01393 at 59.410 kb on - strand, within BACOVA_01393 at 59.410 kb on - strand, within BACOVA_01393 at 59.417 kb on - strand, within BACOVA_01393 at 59.417 kb on - strand, within BACOVA_01393 at 59.420 kb on + strand, within BACOVA_01393 at 59.421 kb on - strand, within BACOVA_01393 at 59.421 kb on - strand, within BACOVA_01393 at 59.421 kb on - strand, within BACOVA_01393 at 59.557 kb on - strand, within BACOVA_01393 at 59.594 kb on + strand at 59.651 kb on - strand at 59.651 kb on - strand at 59.651 kb on - strand at 59.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 57,176 + BACOVA_01390 0.35 +1.1 57,192 + BACOVA_01390 0.37 -0.4 57,196 + BACOVA_01390 0.37 +0.0 57,197 - BACOVA_01390 0.37 +0.0 57,197 - BACOVA_01390 0.37 +0.9 57,197 - BACOVA_01390 0.37 -1.8 57,199 + BACOVA_01390 0.37 -1.0 57,199 + BACOVA_01390 0.37 -0.2 57,200 - BACOVA_01390 0.37 +0.3 57,233 + BACOVA_01390 0.40 +1.9 57,341 - BACOVA_01390 0.48 -1.1 57,348 + BACOVA_01390 0.48 -0.5 57,350 + BACOVA_01390 0.48 -0.7 57,350 - BACOVA_01390 0.48 +0.8 57,351 - BACOVA_01390 0.48 +2.0 57,354 + BACOVA_01390 0.48 +0.5 57,498 - BACOVA_01390 0.59 -1.2 57,559 + BACOVA_01390 0.64 +0.1 57,590 - BACOVA_01390 0.66 +0.1 57,856 + BACOVA_01390 0.85 +0.1 57,857 - BACOVA_01390 0.85 -0.6 57,986 + -0.0 58,017 - -2.5 58,055 - -1.7 58,063 - -0.5 58,063 - -0.6 58,063 - -1.2 58,063 - -0.5 58,066 + -0.1 58,066 + +0.9 58,066 + +1.5 58,066 + +0.1 58,104 - +0.2 58,156 + BACOVA_01391 0.15 -1.1 58,157 - BACOVA_01391 0.15 -1.8 58,158 + BACOVA_01391 0.15 +1.4 58,194 - BACOVA_01391 0.21 -1.0 58,285 - BACOVA_01391 0.36 -2.4 58,285 - BACOVA_01391 0.36 +0.6 58,379 - BACOVA_01391 0.51 +0.4 58,465 + BACOVA_01391 0.65 -2.1 58,576 + BACOVA_01391 0.84 -0.7 58,576 + BACOVA_01391 0.84 +0.4 58,577 - BACOVA_01391 0.84 +0.8 58,577 - BACOVA_01391 0.84 -1.6 58,628 + +0.1 58,629 - +0.9 58,629 - -0.4 58,631 - +0.2 58,654 + -0.3 58,721 - BACOVA_01392 0.48 -0.3 58,747 + BACOVA_01392 0.69 -0.0 58,747 + BACOVA_01392 0.69 -1.6 58,748 - BACOVA_01392 0.70 -1.0 58,754 + BACOVA_01392 0.75 +0.3 58,755 - BACOVA_01392 0.76 +0.9 58,755 - BACOVA_01392 0.76 -1.0 58,755 - BACOVA_01392 0.76 -0.6 58,801 - +0.8 58,839 + -2.0 58,924 + BACOVA_01393 0.17 +0.8 58,946 + BACOVA_01393 0.19 +2.6 58,947 - BACOVA_01393 0.19 +1.0 58,979 + BACOVA_01393 0.23 +0.7 58,980 - BACOVA_01393 0.23 -0.5 58,980 - BACOVA_01393 0.23 +0.0 58,980 - BACOVA_01393 0.23 +0.5 59,067 + BACOVA_01393 0.33 +1.1 59,067 + BACOVA_01393 0.33 -2.4 59,072 + BACOVA_01393 0.33 -1.4 59,195 + BACOVA_01393 0.47 -0.5 59,326 + BACOVA_01393 0.62 -0.7 59,407 + BACOVA_01393 0.72 -1.9 59,407 + BACOVA_01393 0.72 +0.6 59,407 + BACOVA_01393 0.72 -0.2 59,410 - BACOVA_01393 0.72 -2.4 59,410 - BACOVA_01393 0.72 -0.2 59,417 - BACOVA_01393 0.73 +0.3 59,417 - BACOVA_01393 0.73 +0.0 59,420 + BACOVA_01393 0.73 -1.4 59,421 - BACOVA_01393 0.73 +1.5 59,421 - BACOVA_01393 0.73 -0.2 59,421 - BACOVA_01393 0.73 -0.1 59,557 - BACOVA_01393 0.89 -0.2 59,594 + -0.1 59,651 - -0.4 59,651 - +0.6 59,651 - -0.2 59,651 - +1.9
Or see this region's nucleotide sequence