Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01164 and BACOVA_01165 overlap by 8 nucleotides BACOVA_01165 and BACOVA_01166 are separated by 157 nucleotides BACOVA_01166 and BACOVA_01167 overlap by 4 nucleotides BACOVA_01167 and BACOVA_01169 are separated by 23 nucleotides
BACOVA_01164: BACOVA_01164 - ATP-dependent DNA helicase, RecQ family, at 118,982 to 120,892
_01164
BACOVA_01165: BACOVA_01165 - single-stranded-DNA-specific exonuclease RecJ, at 120,885 to 122,651
_01165
BACOVA_01166: BACOVA_01166 - hypothetical protein, at 122,809 to 123,039
_01166
BACOVA_01167: BACOVA_01167 - hypothetical protein, at 123,036 to 123,491
_01167
BACOVA_01169: BACOVA_01169 - hypothetical protein, at 123,515 to 123,739
_01169
Position (kb) 120
121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 120.883 kb on - strand at 122.609 kb on - strand at 122.728 kb on + strand at 122.746 kb on + strand at 122.774 kb on + strand at 122.814 kb on + strand at 122.815 kb on - strand at 122.876 kb on + strand, within BACOVA_01166 at 122.877 kb on - strand, within BACOVA_01166 at 122.877 kb on - strand, within BACOVA_01166 at 122.925 kb on - strand, within BACOVA_01166 at 122.927 kb on + strand, within BACOVA_01166 at 122.953 kb on - strand, within BACOVA_01166 at 122.953 kb on - strand, within BACOVA_01166 at 122.954 kb on + strand, within BACOVA_01166 at 122.954 kb on + strand, within BACOVA_01166 at 122.955 kb on - strand, within BACOVA_01166 at 122.955 kb on - strand, within BACOVA_01166 at 122.974 kb on + strand, within BACOVA_01166 at 122.975 kb on - strand, within BACOVA_01166 at 122.975 kb on - strand, within BACOVA_01166 at 122.981 kb on - strand, within BACOVA_01166 at 122.981 kb on - strand, within BACOVA_01166 at 123.009 kb on + strand, within BACOVA_01166 at 123.009 kb on + strand, within BACOVA_01166 at 123.009 kb on + strand, within BACOVA_01166 at 123.010 kb on - strand, within BACOVA_01166 at 123.024 kb on + strand at 123.052 kb on + strand at 123.082 kb on + strand, within BACOVA_01167 at 123.082 kb on + strand, within BACOVA_01167 at 123.082 kb on + strand, within BACOVA_01167 at 123.087 kb on + strand, within BACOVA_01167 at 123.087 kb on + strand, within BACOVA_01167 at 123.088 kb on - strand, within BACOVA_01167 at 123.088 kb on - strand, within BACOVA_01167 at 123.112 kb on - strand, within BACOVA_01167 at 123.112 kb on - strand, within BACOVA_01167 at 123.154 kb on + strand, within BACOVA_01167 at 123.169 kb on + strand, within BACOVA_01167 at 123.169 kb on + strand, within BACOVA_01167 at 123.192 kb on - strand, within BACOVA_01167 at 123.204 kb on + strand, within BACOVA_01167 at 123.205 kb on - strand, within BACOVA_01167 at 123.207 kb on - strand, within BACOVA_01167 at 123.207 kb on - strand, within BACOVA_01167 at 123.212 kb on - strand, within BACOVA_01167 at 123.212 kb on - strand, within BACOVA_01167 at 123.253 kb on - strand, within BACOVA_01167 at 123.281 kb on - strand, within BACOVA_01167 at 123.281 kb on - strand, within BACOVA_01167 at 123.319 kb on - strand, within BACOVA_01167 at 123.322 kb on - strand, within BACOVA_01167 at 123.468 kb on + strand at 123.505 kb on + strand at 123.505 kb on + strand at 123.508 kb on - strand at 123.508 kb on - strand at 123.516 kb on + strand at 123.536 kb on - strand at 123.563 kb on - strand, within BACOVA_01169
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 120,883 - +1.2 122,609 - +0.0 122,728 + +0.5 122,746 + -0.2 122,774 + -0.4 122,814 + +0.9 122,815 - -0.4 122,876 + BACOVA_01166 0.29 +3.6 122,877 - BACOVA_01166 0.29 -1.2 122,877 - BACOVA_01166 0.29 -0.6 122,925 - BACOVA_01166 0.50 -1.8 122,927 + BACOVA_01166 0.51 -0.5 122,953 - BACOVA_01166 0.62 -0.6 122,953 - BACOVA_01166 0.62 +1.3 122,954 + BACOVA_01166 0.63 +0.3 122,954 + BACOVA_01166 0.63 -0.1 122,955 - BACOVA_01166 0.63 +0.0 122,955 - BACOVA_01166 0.63 -2.8 122,974 + BACOVA_01166 0.71 +1.1 122,975 - BACOVA_01166 0.72 +0.0 122,975 - BACOVA_01166 0.72 -1.0 122,981 - BACOVA_01166 0.74 -1.1 122,981 - BACOVA_01166 0.74 -0.4 123,009 + BACOVA_01166 0.87 +0.4 123,009 + BACOVA_01166 0.87 -1.0 123,009 + BACOVA_01166 0.87 -2.2 123,010 - BACOVA_01166 0.87 +1.2 123,024 + +0.9 123,052 + +0.7 123,082 + BACOVA_01167 0.10 -1.5 123,082 + BACOVA_01167 0.10 +0.8 123,082 + BACOVA_01167 0.10 +0.5 123,087 + BACOVA_01167 0.11 -0.1 123,087 + BACOVA_01167 0.11 +0.1 123,088 - BACOVA_01167 0.11 +0.1 123,088 - BACOVA_01167 0.11 +0.3 123,112 - BACOVA_01167 0.17 -0.1 123,112 - BACOVA_01167 0.17 +1.2 123,154 + BACOVA_01167 0.26 -0.8 123,169 + BACOVA_01167 0.29 -1.3 123,169 + BACOVA_01167 0.29 -0.9 123,192 - BACOVA_01167 0.34 -1.3 123,204 + BACOVA_01167 0.37 -0.0 123,205 - BACOVA_01167 0.37 +1.6 123,207 - BACOVA_01167 0.38 +0.7 123,207 - BACOVA_01167 0.38 -0.5 123,212 - BACOVA_01167 0.39 -1.6 123,212 - BACOVA_01167 0.39 -1.1 123,253 - BACOVA_01167 0.48 -1.1 123,281 - BACOVA_01167 0.54 -0.2 123,281 - BACOVA_01167 0.54 -2.1 123,319 - BACOVA_01167 0.62 -0.6 123,322 - BACOVA_01167 0.63 -0.2 123,468 + -1.2 123,505 + -0.0 123,505 + -0.4 123,508 - -1.3 123,508 - -0.9 123,516 + -0.4 123,536 - -1.9 123,563 - BACOVA_01169 0.21 -0.3
Or see this region's nucleotide sequence