Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00860 and BACOVA_00861 are separated by 150 nucleotides BACOVA_00861 and BACOVA_00862 are separated by 126 nucleotides BACOVA_00862 and BACOVA_00863 are separated by 44 nucleotides BACOVA_00863 and BACOVA_00864 are separated by 207 nucleotides
BACOVA_00860: BACOVA_00860 - transcriptional regulator, LacI family, at 114,851 to 115,924
_00860
BACOVA_00861: BACOVA_00861 - hypothetical protein, at 116,075 to 116,188
_00861
BACOVA_00862: BACOVA_00862 - hypothetical protein, at 116,315 to 116,602
_00862
BACOVA_00863: BACOVA_00863 - transglycosylase associated protein, at 116,647 to 116,892
_00863
BACOVA_00864: BACOVA_00864 - transporter, major facilitator family protein, at 117,100 to 118,305
_00864
Position (kb)
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 115.337 kb on + strand, within BACOVA_00860 at 115.338 kb on - strand, within BACOVA_00860 at 115.399 kb on - strand, within BACOVA_00860 at 115.416 kb on + strand, within BACOVA_00860 at 115.455 kb on + strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.461 kb on + strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.466 kb on + strand, within BACOVA_00860 at 115.467 kb on - strand, within BACOVA_00860 at 115.467 kb on - strand, within BACOVA_00860 at 115.532 kb on + strand, within BACOVA_00860 at 115.570 kb on + strand, within BACOVA_00860 at 115.591 kb on + strand, within BACOVA_00860 at 115.591 kb on + strand, within BACOVA_00860 at 115.592 kb on - strand, within BACOVA_00860 at 115.594 kb on - strand, within BACOVA_00860 at 115.594 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.661 kb on - strand, within BACOVA_00860 at 115.684 kb on - strand, within BACOVA_00860 at 115.708 kb on + strand, within BACOVA_00860 at 115.725 kb on + strand, within BACOVA_00860 at 115.726 kb on - strand, within BACOVA_00860 at 115.726 kb on - strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.779 kb on - strand, within BACOVA_00860 at 115.779 kb on - strand, within BACOVA_00860 at 115.823 kb on + strand at 115.854 kb on - strand at 115.883 kb on - strand at 115.892 kb on + strand at 115.933 kb on - strand at 115.936 kb on + strand at 116.098 kb on + strand, within BACOVA_00861 at 116.099 kb on - strand, within BACOVA_00861 at 116.101 kb on + strand, within BACOVA_00861 at 116.120 kb on - strand, within BACOVA_00861 at 116.194 kb on + strand at 116.316 kb on + strand at 116.330 kb on - strand at 116.374 kb on + strand, within BACOVA_00862 at 116.407 kb on + strand, within BACOVA_00862 at 116.451 kb on - strand, within BACOVA_00862 at 116.479 kb on + strand, within BACOVA_00862 at 116.479 kb on + strand, within BACOVA_00862 at 116.485 kb on + strand, within BACOVA_00862 at 116.486 kb on - strand, within BACOVA_00862 at 116.486 kb on - strand, within BACOVA_00862 at 116.488 kb on - strand, within BACOVA_00862 at 116.535 kb on + strand, within BACOVA_00862 at 116.594 kb on - strand at 116.619 kb on + strand at 116.620 kb on - strand at 116.640 kb on + strand at 116.644 kb on + strand at 116.644 kb on + strand at 116.683 kb on + strand, within BACOVA_00863 at 116.684 kb on - strand, within BACOVA_00863 at 116.684 kb on - strand, within BACOVA_00863 at 116.710 kb on + strand, within BACOVA_00863 at 116.806 kb on - strand, within BACOVA_00863 at 116.862 kb on + strand, within BACOVA_00863 at 116.875 kb on - strand at 116.875 kb on - strand at 116.876 kb on + strand at 116.877 kb on - strand at 116.882 kb on - strand at 116.883 kb on + strand at 116.883 kb on + strand at 116.893 kb on - strand at 116.895 kb on - strand at 116.925 kb on + strand at 116.925 kb on + strand at 116.926 kb on - strand at 116.992 kb on + strand at 116.998 kb on + strand at 117.003 kb on + strand at 117.004 kb on - strand at 117.025 kb on - strand at 117.027 kb on - strand at 117.052 kb on - strand at 117.096 kb on + strand at 117.099 kb on + strand at 117.100 kb on - strand at 117.201 kb on - strand at 117.212 kb on - strand at 117.218 kb on + strand at 117.218 kb on + strand at 117.222 kb on + strand, within BACOVA_00864 at 117.234 kb on - strand, within BACOVA_00864 at 117.240 kb on + strand, within BACOVA_00864 at 117.241 kb on - strand, within BACOVA_00864 at 117.261 kb on + strand, within BACOVA_00864 at 117.262 kb on - strand, within BACOVA_00864 at 117.262 kb on - strand, within BACOVA_00864 at 117.262 kb on - strand, within BACOVA_00864 at 117.270 kb on - strand, within BACOVA_00864 at 117.366 kb on + strand, within BACOVA_00864 at 117.367 kb on - strand, within BACOVA_00864 at 117.390 kb on - strand, within BACOVA_00864 at 117.407 kb on + strand, within BACOVA_00864 at 117.407 kb on + strand, within BACOVA_00864 at 117.408 kb on - strand, within BACOVA_00864 at 117.408 kb on - strand, within BACOVA_00864 at 117.408 kb on - strand, within BACOVA_00864 at 117.419 kb on + strand, within BACOVA_00864 at 117.419 kb on + strand, within BACOVA_00864 at 117.557 kb on + strand, within BACOVA_00864 at 117.557 kb on + strand, within BACOVA_00864 at 117.558 kb on - strand, within BACOVA_00864 at 117.578 kb on + strand, within BACOVA_00864
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 115,337 + BACOVA_00860 0.45 -2.0 115,338 - BACOVA_00860 0.45 -0.4 115,399 - BACOVA_00860 0.51 +0.1 115,416 + BACOVA_00860 0.53 +0.5 115,455 + BACOVA_00860 0.56 +0.6 115,456 - BACOVA_00860 0.56 +0.6 115,456 - BACOVA_00860 0.56 -0.1 115,456 - BACOVA_00860 0.56 -0.8 115,461 + BACOVA_00860 0.57 +1.5 115,462 - BACOVA_00860 0.57 +0.4 115,462 - BACOVA_00860 0.57 +0.7 115,462 - BACOVA_00860 0.57 -1.8 115,462 - BACOVA_00860 0.57 +0.5 115,466 + BACOVA_00860 0.57 -1.3 115,467 - BACOVA_00860 0.57 -2.2 115,467 - BACOVA_00860 0.57 -2.7 115,532 + BACOVA_00860 0.63 -0.3 115,570 + BACOVA_00860 0.67 +0.6 115,591 + BACOVA_00860 0.69 +1.0 115,591 + BACOVA_00860 0.69 +0.5 115,592 - BACOVA_00860 0.69 +0.8 115,594 - BACOVA_00860 0.69 +1.2 115,594 - BACOVA_00860 0.69 -1.4 115,659 - BACOVA_00860 0.75 -0.1 115,659 - BACOVA_00860 0.75 -1.6 115,659 - BACOVA_00860 0.75 +0.7 115,661 - BACOVA_00860 0.75 +0.4 115,684 - BACOVA_00860 0.78 +0.2 115,708 + BACOVA_00860 0.80 +1.1 115,725 + BACOVA_00860 0.81 -0.7 115,726 - BACOVA_00860 0.81 +0.4 115,726 - BACOVA_00860 0.81 +1.0 115,778 + BACOVA_00860 0.86 -0.3 115,778 + BACOVA_00860 0.86 -0.0 115,778 + BACOVA_00860 0.86 +0.7 115,779 - BACOVA_00860 0.86 -1.1 115,779 - BACOVA_00860 0.86 -0.1 115,823 + +0.8 115,854 - +2.6 115,883 - -0.9 115,892 + -3.4 115,933 - -1.2 115,936 + -1.7 116,098 + BACOVA_00861 0.20 +0.6 116,099 - BACOVA_00861 0.21 +0.1 116,101 + BACOVA_00861 0.23 -0.1 116,120 - BACOVA_00861 0.39 +1.1 116,194 + +2.4 116,316 + +0.9 116,330 - -0.4 116,374 + BACOVA_00862 0.20 +0.5 116,407 + BACOVA_00862 0.32 +0.3 116,451 - BACOVA_00862 0.47 -1.4 116,479 + BACOVA_00862 0.57 -1.8 116,479 + BACOVA_00862 0.57 +0.4 116,485 + BACOVA_00862 0.59 +0.9 116,486 - BACOVA_00862 0.59 +0.0 116,486 - BACOVA_00862 0.59 -1.2 116,488 - BACOVA_00862 0.60 -1.4 116,535 + BACOVA_00862 0.76 -0.7 116,594 - -0.5 116,619 + -2.0 116,620 - -0.7 116,640 + -0.5 116,644 + -0.7 116,644 + -0.5 116,683 + BACOVA_00863 0.15 -0.1 116,684 - BACOVA_00863 0.15 +0.8 116,684 - BACOVA_00863 0.15 +1.6 116,710 + BACOVA_00863 0.26 -2.3 116,806 - BACOVA_00863 0.65 -0.7 116,862 + BACOVA_00863 0.87 -0.2 116,875 - -0.5 116,875 - -2.0 116,876 + -0.0 116,877 - -0.3 116,882 - -1.1 116,883 + +0.5 116,883 + +0.3 116,893 - -1.3 116,895 - +0.0 116,925 + -0.6 116,925 + +1.4 116,926 - -0.7 116,992 + -0.1 116,998 + -0.9 117,003 + +1.6 117,004 - +0.2 117,025 - -0.7 117,027 - -0.7 117,052 - +2.4 117,096 + -0.8 117,099 + -2.4 117,100 - +2.0 117,201 - +0.1 117,212 - +2.1 117,218 + +0.9 117,218 + -0.4 117,222 + BACOVA_00864 0.10 -1.5 117,234 - BACOVA_00864 0.11 +1.3 117,240 + BACOVA_00864 0.12 +0.9 117,241 - BACOVA_00864 0.12 -0.5 117,261 + BACOVA_00864 0.13 -1.8 117,262 - BACOVA_00864 0.13 +1.8 117,262 - BACOVA_00864 0.13 -1.4 117,262 - BACOVA_00864 0.13 +0.7 117,270 - BACOVA_00864 0.14 +0.8 117,366 + BACOVA_00864 0.22 -1.5 117,367 - BACOVA_00864 0.22 -1.5 117,390 - BACOVA_00864 0.24 -0.8 117,407 + BACOVA_00864 0.25 -0.4 117,407 + BACOVA_00864 0.25 +0.2 117,408 - BACOVA_00864 0.26 +0.1 117,408 - BACOVA_00864 0.26 +0.7 117,408 - BACOVA_00864 0.26 +1.3 117,419 + BACOVA_00864 0.26 -0.2 117,419 + BACOVA_00864 0.26 -1.0 117,557 + BACOVA_00864 0.38 +0.5 117,557 + BACOVA_00864 0.38 -0.1 117,558 - BACOVA_00864 0.38 -0.5 117,578 + BACOVA_00864 0.40 -0.6
Or see this region's nucleotide sequence