Experiment: b-Glucan from Oat 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00671 and BACOVA_00672 overlap by 4 nucleotides BACOVA_00672 and BACOVA_00673 are separated by 39 nucleotides BACOVA_00673 and BACOVA_00674 are separated by 87 nucleotides
BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159
_00671
BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959
_00672
BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157
_00673
BACOVA_00674: BACOVA_00674 - outer membrane efflux protein, at 34,245 to 35,429
_00674
Position (kb) 33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.181 kb on - strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.233 kb on - strand, within BACOVA_00671 at 32.322 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.362 kb on - strand, within BACOVA_00671 at 32.364 kb on + strand, within BACOVA_00671 at 32.365 kb on - strand, within BACOVA_00671 at 32.376 kb on + strand, within BACOVA_00671 at 32.439 kb on - strand, within BACOVA_00671 at 32.468 kb on + strand, within BACOVA_00671 at 32.541 kb on + strand, within BACOVA_00671 at 32.609 kb on + strand, within BACOVA_00671 at 32.785 kb on + strand, within BACOVA_00671 at 32.786 kb on - strand, within BACOVA_00671 at 32.787 kb on + strand, within BACOVA_00671 at 32.787 kb on + strand, within BACOVA_00671 at 32.898 kb on + strand, within BACOVA_00671 at 32.940 kb on - strand, within BACOVA_00671 at 32.962 kb on + strand, within BACOVA_00671 at 32.982 kb on + strand, within BACOVA_00671 at 32.983 kb on - strand, within BACOVA_00671 at 32.983 kb on - strand, within BACOVA_00671 at 32.988 kb on - strand, within BACOVA_00671 at 33.033 kb on + strand at 33.034 kb on - strand at 33.034 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.131 kb on - strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.157 kb on + strand at 33.256 kb on + strand, within BACOVA_00672 at 33.256 kb on + strand, within BACOVA_00672 at 33.257 kb on - strand, within BACOVA_00672 at 33.350 kb on - strand, within BACOVA_00672 at 33.364 kb on - strand, within BACOVA_00672 at 33.366 kb on + strand, within BACOVA_00672 at 33.367 kb on - strand, within BACOVA_00672 at 33.399 kb on - strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.624 kb on + strand, within BACOVA_00672 at 33.647 kb on + strand, within BACOVA_00672 at 33.667 kb on - strand, within BACOVA_00672 at 33.709 kb on + strand, within BACOVA_00672 at 33.710 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.746 kb on + strand, within BACOVA_00672 at 33.747 kb on - strand, within BACOVA_00672 at 33.760 kb on - strand, within BACOVA_00672 at 33.823 kb on + strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.853 kb on + strand, within BACOVA_00672 at 33.873 kb on + strand, within BACOVA_00672 at 33.874 kb on - strand, within BACOVA_00672 at 33.933 kb on + strand at 33.933 kb on + strand at 33.934 kb on - strand at 33.941 kb on + strand at 33.954 kb on + strand at 33.963 kb on + strand at 33.986 kb on + strand at 33.987 kb on - strand at 34.015 kb on + strand, within BACOVA_00673 at 34.016 kb on - strand, within BACOVA_00673 at 34.020 kb on + strand, within BACOVA_00673 at 34.021 kb on - strand, within BACOVA_00673 at 34.033 kb on + strand, within BACOVA_00673 at 34.069 kb on + strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.107 kb on + strand, within BACOVA_00673 at 34.108 kb on - strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.110 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.124 kb on + strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.160 kb on + strand at 34.161 kb on - strand at 34.167 kb on + strand at 34.167 kb on + strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.171 kb on + strand at 34.177 kb on + strand at 34.177 kb on + strand at 34.177 kb on + strand at 34.178 kb on - strand at 34.179 kb on + strand at 34.181 kb on + strand at 34.193 kb on - strand at 34.199 kb on + strand at 34.200 kb on - strand at 34.224 kb on + strand at 34.224 kb on + strand at 34.225 kb on - strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.239 kb on + strand at 34.240 kb on - strand at 34.242 kb on + strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.246 kb on + strand at 34.247 kb on - strand at 34.249 kb on - strand at 34.249 kb on - strand at 34.249 kb on - strand at 34.286 kb on - strand at 34.335 kb on + strand at 34.348 kb on + strand at 34.428 kb on - strand, within BACOVA_00674 at 34.428 kb on - strand, within BACOVA_00674 at 34.430 kb on - strand, within BACOVA_00674 at 34.508 kb on + strand, within BACOVA_00674 at 34.599 kb on + strand, within BACOVA_00674 at 34.674 kb on - strand, within BACOVA_00674 at 34.716 kb on + strand, within BACOVA_00674 at 34.787 kb on + strand, within BACOVA_00674
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/mL (C) remove 32,181 - BACOVA_00671 0.35 -0.1 32,232 + BACOVA_00671 0.39 -0.2 32,232 + BACOVA_00671 0.39 -0.3 32,233 - BACOVA_00671 0.39 +0.2 32,322 + BACOVA_00671 0.45 -0.1 32,355 + BACOVA_00671 0.47 -0.6 32,355 + BACOVA_00671 0.47 -0.1 32,355 + BACOVA_00671 0.47 +1.6 32,355 + BACOVA_00671 0.47 +0.9 32,355 + BACOVA_00671 0.47 +0.0 32,357 + BACOVA_00671 0.47 +0.8 32,357 + BACOVA_00671 0.47 +1.2 32,361 + BACOVA_00671 0.47 +1.4 32,361 + BACOVA_00671 0.47 +1.3 32,361 + BACOVA_00671 0.47 +2.3 32,362 - BACOVA_00671 0.47 -0.9 32,364 + BACOVA_00671 0.47 +0.1 32,365 - BACOVA_00671 0.48 +0.5 32,376 + BACOVA_00671 0.48 +1.2 32,439 - BACOVA_00671 0.52 -0.6 32,468 + BACOVA_00671 0.54 +0.5 32,541 + BACOVA_00671 0.59 +0.6 32,609 + BACOVA_00671 0.64 +1.9 32,785 + BACOVA_00671 0.75 -0.6 32,786 - BACOVA_00671 0.75 +1.6 32,787 + BACOVA_00671 0.75 +1.7 32,787 + BACOVA_00671 0.75 -0.6 32,898 + BACOVA_00671 0.83 +1.7 32,940 - BACOVA_00671 0.85 +1.4 32,962 + BACOVA_00671 0.87 -0.6 32,982 + BACOVA_00671 0.88 +3.0 32,983 - BACOVA_00671 0.88 +1.2 32,983 - BACOVA_00671 0.88 +0.2 32,988 - BACOVA_00671 0.89 +0.4 33,033 + +0.6 33,034 - +1.5 33,034 - +1.0 33,113 - -0.6 33,113 - -0.7 33,113 - +1.4 33,131 - +1.4 33,145 + +1.0 33,145 + +0.3 33,145 + +1.4 33,157 + -0.8 33,256 + BACOVA_00672 0.12 -1.0 33,256 + BACOVA_00672 0.12 +0.2 33,257 - BACOVA_00672 0.13 +0.3 33,350 - BACOVA_00672 0.24 +0.9 33,364 - BACOVA_00672 0.26 -1.0 33,366 + BACOVA_00672 0.26 +0.3 33,367 - BACOVA_00672 0.26 -0.1 33,399 - BACOVA_00672 0.30 -2.0 33,420 + BACOVA_00672 0.33 +2.2 33,420 + BACOVA_00672 0.33 -0.6 33,604 - BACOVA_00672 0.56 -0.8 33,604 - BACOVA_00672 0.56 -0.3 33,616 + BACOVA_00672 0.57 -0.8 33,616 + BACOVA_00672 0.57 -1.1 33,617 - BACOVA_00672 0.57 -2.6 33,617 - BACOVA_00672 0.57 -1.3 33,624 + BACOVA_00672 0.58 -0.7 33,647 + BACOVA_00672 0.61 +1.5 33,667 - BACOVA_00672 0.64 -1.2 33,709 + BACOVA_00672 0.69 -2.9 33,710 - BACOVA_00672 0.69 +1.2 33,740 - BACOVA_00672 0.73 -0.9 33,740 - BACOVA_00672 0.73 +0.6 33,746 + BACOVA_00672 0.73 -0.3 33,747 - BACOVA_00672 0.74 -2.3 33,760 - BACOVA_00672 0.75 +2.2 33,823 + BACOVA_00672 0.83 -0.4 33,824 - BACOVA_00672 0.83 -0.7 33,824 - BACOVA_00672 0.83 +0.7 33,853 + BACOVA_00672 0.87 -1.0 33,873 + BACOVA_00672 0.89 -1.2 33,874 - BACOVA_00672 0.89 -0.0 33,933 + +0.2 33,933 + +0.4 33,934 - +0.7 33,941 + +0.6 33,954 + -1.0 33,963 + -1.8 33,986 + +0.0 33,987 - +0.1 34,015 + BACOVA_00673 0.10 -1.6 34,016 - BACOVA_00673 0.11 +1.0 34,020 + BACOVA_00673 0.13 -1.3 34,021 - BACOVA_00673 0.14 +0.3 34,033 + BACOVA_00673 0.21 +0.2 34,069 + BACOVA_00673 0.44 -0.6 34,070 - BACOVA_00673 0.45 -0.2 34,070 - BACOVA_00673 0.45 +1.7 34,107 + BACOVA_00673 0.68 -0.9 34,108 - BACOVA_00673 0.69 +2.1 34,109 + BACOVA_00673 0.69 +0.0 34,109 + BACOVA_00673 0.69 -0.7 34,110 - BACOVA_00673 0.70 +0.9 34,114 - BACOVA_00673 0.72 +1.3 34,114 - BACOVA_00673 0.72 -1.0 34,122 - BACOVA_00673 0.77 +0.5 34,122 - BACOVA_00673 0.77 -0.4 34,124 + BACOVA_00673 0.79 +0.2 34,125 - BACOVA_00673 0.79 -1.0 34,125 - BACOVA_00673 0.79 +1.3 34,160 + -0.9 34,161 - +0.8 34,167 + +1.0 34,167 + -0.2 34,168 - -0.2 34,168 - -1.4 34,168 - +0.3 34,168 - -0.7 34,171 + -1.3 34,177 + +0.7 34,177 + +0.2 34,177 + -0.8 34,178 - -1.0 34,179 + -0.6 34,181 + +0.0 34,193 - +0.2 34,199 + -0.7 34,200 - +0.4 34,224 + +0.5 34,224 + +0.2 34,225 - +0.6 34,235 + +0.6 34,235 + +0.2 34,235 + -1.1 34,239 + +1.6 34,240 - +1.2 34,242 + +0.1 34,243 - -0.6 34,243 - +0.5 34,246 + -1.7 34,247 - -1.0 34,249 - +0.2 34,249 - -0.0 34,249 - -0.9 34,286 - +0.4 34,335 + -1.1 34,348 + -1.3 34,428 - BACOVA_00674 0.15 -2.1 34,428 - BACOVA_00674 0.15 -0.5 34,430 - BACOVA_00674 0.16 -1.0 34,508 + BACOVA_00674 0.22 -3.3 34,599 + BACOVA_00674 0.30 -0.5 34,674 - BACOVA_00674 0.36 -0.1 34,716 + BACOVA_00674 0.40 +0.3 34,787 + BACOVA_00674 0.46 -1.5
Or see this region's nucleotide sequence