Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00203

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00199 and MPMX26_00200 are separated by 98 nucleotidesMPMX26_00200 and MPMX26_00201 are separated by 48 nucleotidesMPMX26_00201 and MPMX26_00202 are separated by 37 nucleotidesMPMX26_00202 and MPMX26_00203 are separated by 16 nucleotidesMPMX26_00203 and MPMX26_00204 are separated by 160 nucleotides MPMX26_00199: MPMX26_00199 - Anthranilate synthase component 1, at 213,651 to 215,144 _00199 MPMX26_00200: MPMX26_00200 - tRNA-Thr, at 215,243 to 215,318 _00200 MPMX26_00201: MPMX26_00201 - tRNA-Tyr, at 215,367 to 215,450 _00201 MPMX26_00202: MPMX26_00202 - tRNA-Gly, at 215,488 to 215,563 _00202 MPMX26_00203: MPMX26_00203 - tRNA-Thr, at 215,580 to 215,654 _00203 MPMX26_00204: MPMX26_00204 - Elongation factor Tu, at 215,815 to 217,005 _00204 Position (kb) 215 216Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 214.598 kb on + strand, within MPMX26_00199at 214.611 kb on + strand, within MPMX26_00199at 214.611 kb on + strand, within MPMX26_00199at 214.611 kb on + strand, within MPMX26_00199at 214.611 kb on + strand, within MPMX26_00199at 214.624 kb on + strand, within MPMX26_00199at 214.637 kb on - strand, within MPMX26_00199at 214.668 kb on + strand, within MPMX26_00199at 214.723 kb on + strand, within MPMX26_00199at 214.726 kb on + strand, within MPMX26_00199at 214.727 kb on + strand, within MPMX26_00199at 214.727 kb on + strand, within MPMX26_00199at 214.727 kb on + strand, within MPMX26_00199at 214.728 kb on + strand, within MPMX26_00199at 214.728 kb on + strand, within MPMX26_00199at 214.734 kb on + strand, within MPMX26_00199at 214.762 kb on + strand, within MPMX26_00199at 214.762 kb on + strand, within MPMX26_00199at 214.791 kb on + strand, within MPMX26_00199at 214.813 kb on + strand, within MPMX26_00199at 214.822 kb on + strand, within MPMX26_00199at 214.870 kb on + strand, within MPMX26_00199at 214.872 kb on + strand, within MPMX26_00199at 214.938 kb on + strand, within MPMX26_00199at 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.027 kb on + strandat 215.032 kb on + strandat 215.037 kb on + strandat 215.051 kb on + strandat 215.102 kb on + strandat 215.102 kb on + strandat 215.102 kb on + strandat 215.102 kb on + strandat 215.592 kb on + strand, within MPMX26_00203at 215.597 kb on + strand, within MPMX26_00203at 215.597 kb on + strand, within MPMX26_00203at 215.597 kb on + strand, within MPMX26_00203at 215.602 kb on + strand, within MPMX26_00203at 215.607 kb on + strand, within MPMX26_00203at 215.607 kb on + strand, within MPMX26_00203at 215.607 kb on + strand, within MPMX26_00203at 215.611 kb on + strand, within MPMX26_00203at 215.649 kb on + strandat 215.719 kb on + strandat 215.753 kb on + strandat 215.758 kb on + strandat 215.769 kb on + strandat 215.787 kb on + strandat 215.787 kb on + strandat 215.788 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
214,598 + MPMX26_00199 0.63 -4.8
214,611 + MPMX26_00199 0.64 -5.5
214,611 + MPMX26_00199 0.64 -3.0
214,611 + MPMX26_00199 0.64 -3.3
214,611 + MPMX26_00199 0.64 -2.7
214,624 + MPMX26_00199 0.65 -4.3
214,637 - MPMX26_00199 0.66 -1.0
214,668 + MPMX26_00199 0.68 -3.4
214,723 + MPMX26_00199 0.72 -3.2
214,726 + MPMX26_00199 0.72 -5.6
214,727 + MPMX26_00199 0.72 -2.5
214,727 + MPMX26_00199 0.72 -4.3
214,727 + MPMX26_00199 0.72 -4.4
214,728 + MPMX26_00199 0.72 -5.4
214,728 + MPMX26_00199 0.72 -4.6
214,734 + MPMX26_00199 0.72 -4.8
214,762 + MPMX26_00199 0.74 -4.2
214,762 + MPMX26_00199 0.74 -5.2
214,791 + MPMX26_00199 0.76 -3.1
214,813 + MPMX26_00199 0.78 -4.8
214,822 + MPMX26_00199 0.78 -4.3
214,870 + MPMX26_00199 0.82 -3.5
214,872 + MPMX26_00199 0.82 -6.7
214,938 + MPMX26_00199 0.86 -1.3
215,027 + -4.0
215,027 + -4.0
215,027 + -3.4
215,027 + -5.7
215,027 + -2.9
215,027 + -3.2
215,027 + -3.6
215,027 + -4.9
215,027 + -2.9
215,027 + -5.4
215,027 + -4.4
215,032 + -3.4
215,037 + -3.8
215,051 + -4.0
215,102 + -3.6
215,102 + -4.0
215,102 + -4.8
215,102 + -6.8
215,592 + MPMX26_00203 0.16 -3.0
215,597 + MPMX26_00203 0.23 -1.5
215,597 + MPMX26_00203 0.23 -4.4
215,597 + MPMX26_00203 0.23 -3.2
215,602 + MPMX26_00203 0.29 -2.9
215,607 + MPMX26_00203 0.36 -3.3
215,607 + MPMX26_00203 0.36 -3.3
215,607 + MPMX26_00203 0.36 -3.9
215,611 + MPMX26_00203 0.41 -3.3
215,649 + -0.8
215,719 + -0.3
215,753 + -0.1
215,758 + +0.1
215,769 + -0.8
215,787 + -0.2
215,787 + -0.4
215,788 + +0.1

Or see this region's nucleotide sequence